Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866364:139866426:[+] chr2:136956848:136956909:[-] nonBSJ supported Exon

circRNA 5':AUCCACGUCUUCCAACAAAGCCAUGUCU---UCCA-UCAAAUUAAUGUCUUCCAGCCUACUUGUGUC 3'


            ||||| ||| |||| |||| :|||||: || || |||||||||


target  3': AGGUGACU--GGUGGAAACGGUUAUUAUCUAGGUCGGUUUAGAGACCCUUA-UCA-AUGAACACAU 5'

 -35.20 2 RIC-seq
chrX:139866382:139866426:[+] chr2:136956854:136956909:[-] nonBSJ supported Exon

circRNA 5':AGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCC-----------------UACUUGUGUC 3'


            ||||: | ||| ||||: ||||||| |||||||||


target  3':CUGGUGGAAACGGUU-----AUUAUCU-AGGUCGGUUUAGAGACCCUUAUCAAUGAACACAU 5'

 -28.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:136956848:136956909:[-] target - chr2:136956851-136956852 A>G LAML-KR ICGC
chr2:136956848:136956909:[-] target - chr2:136956889-136956890 C>T LAML-KR ICGC
chr2:136956854:136956909:[-] target - chr2:136956889-136956890 C>T LAML-KR ICGC