Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865439:139865457:[+]	chr14:96559557:96559581:[+]	nonBSJ supported	3UTR	circRNA 5':GCUUCCAGAAAA------UCCACAU 3' \|:\|\|\|\|\| :\|\|\|\|\| target 3':GGGAGGUCAGACCCCCAGGGGUGUU 5'	-15.80	3	RIC-seq
chrX:139866278:139866345:[+]	chr14:96558254:96558321:[+]	nonBSJ supported	3UTR	circRNA 5':AUGUCUUCCAGAAAA-UCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAA-UCCAGGUCUU--C-CAGGAA 3' \|\|\|\|:\| \|\|\|: \|\|\|\| \|\|\|\|\|\|\| \|:\|:: \|\|\| \|\| \|\|\|\|\|\| \| \|\|\|:\| target 3': ACAGGAAACAGUGAAAGGG--AGAA-GGAGUUUUUCU-UUGGGUCAUUUACGAGUUCCAGACUCGAGUCUUC 5'	-35.80	1	RIC-seq
chrX:139865629:139865647:[+]	chr14:96554923:96554943:[+]	nonBSJ supported	5UTR	circRNA 5':AUUUCAAGGUCU--UCCAUCA 3' \|:\|\|\| \|\| \|\|\|\|\|\| target 3':AAGAGUACCUCUGUAGGUAGA 5'	-14.50	4	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866278:139866345:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC