Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865672:139865692:[+] chr10:50666463:50666483:[-] nonBSJ supported 3UTR

circRNA 5': UGUCUUCCAGAAAAAUCUGUG 3'


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target  3':GACUGACUUACAUUCUGGACA 5'

 -6.00 1 RIC-seq
chrX:139866512:139866541:[+] chr10:50686429:50686460:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAACCAAGC--CAUGUCUUC-CAGA 3'


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target  3':AGUAGAACUGUAGACUGAAGUA-AGAGGCGUCA 5'

 -12.90 19 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:50686429:50686460:[-] target 1713 chr10:50686432-50686433 T>C Cerebrooculofacioskeletal_syndrome_1 ClinVar
chr10:50666463:50666483:[-] target - chr10:50666482-50666483 G>C LAML-KR ICGC