Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866130:139866143:[+] chr21:22150982:22150995:[-] nonBSJ supported Exon

circRNA 5':CUCCAGGUCUUCCA 3'


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target  3':AAGGUCGAGAAGGA 5'

 -20.30 1 RIC-seq
chrX:139866130:139866157:[+] chr21:22150982:22151009:[-] nonBSJ supported Exon

circRNA 5':CUCCAGGUCUUCCAGACUAUCC-AUGUCU 3'


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target  3':AAGGUCGAGAAGGAAAUA-AGGUUACAGU 5'

 -27.90 17 RIC-seq
chrX:139866130:139866162:[+] chr21:22150982:22151018:[-] nonBSJ supported Exon

circRNA 5':CUCCAGGUCUUCCAGACUAUCC-AUGUC-----UUCCAG 3'


            ||||| |||||| ||| ||||| :||||


target  3':AAGGUCGAGAAGGAAAUA-AGGUUACAGUGUUAGAGGU 5'

 -30.90 3 RIC-seq
chrX:139866130:139866164:[+] chr21:22150982:22151021:[-] nonBSJ supported Exon

circRNA 5':CUCCAGGUCUUCCAGACUAUCC-AUGUC-----UUCCAGAA 3'


            ||||| |||||| ||| ||||| :||||:|


target  3':AAGGUCGAGAAGGAAAUA-AGGUUACAGUGUUAGAGGUUUC 5'

 -33.00 14 RIC-seq