Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865779:139865805:[+] chr15:25224224:25224251:[+] nonBSJ supported Exon

circRNA 5':AAUCCAGG-UCUUCCAGUCAAUCAGUGU 3'


            |:||||| ||||||| ||| |||:


target  3':AUGGGUCCUAGAAGGUGAGUAAAUCAUU 5'

 -28.90 2 RIC-seq
chrX:139865859:139865883:[+] chr15:25223887:25223910:[+] nonBSJ supported Exon

circRNA 5':UACGUCUUCCACCAAAUCCAGGUCU 3'


            ||:| | ||||| ||| |||


target  3':UUGUAAUAAUUGGUUGUGGU-CAGU 5'

 -14.80 1 RIC-seq
chrX:139865859:139865894:[+] chr15:25223884:25223910:[+] nonBSJ supported Exon

circRNA 5':UACGUCUUCCACCAAAUCCAGGUCUUCCAGUCAAUC 3'


            ||:| | ||||| |||||||||


target  3':UUGUAAUAAUUGGUUGU---------GGUCAGUUAC 5'

 -17.10 1 RIC-seq
chrX:139865912:139865929:[+] chr15:25327749:25327767:[+] nonBSJ supported Exon

circRNA 5':AUCCA--GGUCUUCCAGCCA 3'


            |||| ||:||||| ||


target  3':GAGGUGACCGGAAGGAAGG 5'

 -21.30 2 RIC-seq
chrX:139866359:139866377:[+] chr15:25227426:25227447:[+] nonBSJ supported Exon

circRNA 5': AGCAAAU-CCAC-GUCUUCCA 3'


            | ||||| || | |:|||||


target  3':GUGGUUUACGGAGACGGAAGGC 5'

 -16.30 1 RIC-seq
chrX:139866364:139866377:[+] chr15:25227538:25227552:[+] nonBSJ supported Exon

circRNA 5':AUCCA-CGUCUUCCA 3'


            ||| | :|||||


target  3':AAGGAGGAGGAAGGA 5'

 -13.00 1 RIC-seq
chrX:139866580:139866593:[+] chr15:25224042:25224054:[+] nonBSJ supported Exon

circRNA 5':AGCUACGUCUUCCA 3'


            |||||: |||||


target  3': UGAUGUUGAAGGA 5'

 -13.90 2 RIC-seq
chrX:139866642:139866662:[+] chr15:25350844:25350867:[+] nonBSJ supported Exon

circRNA 5': CUUCCA--GCAUCU-GCUCGUCUU 3'


            |:|||| :||: || |: ||


target  3':UGGAGGUUAUGUGUUUCGUGU-GAC 5'

 -12.00 2 RIC-seq
chrX:139866674:139866709:[+] chr15:25512074:25512124:[+] nonBSJ supported Exon

circRNA 5': ACGUCUUCC-AGCAU-CU-CUGUGUCUUCCA------------GCAUCUUC 3'


            ||||| || || ||| :|||| :|||||:


target  3':GUGCAGCCAUUUCCUUCGAUGAC-UAGAAAAUAUUAUCUUACCGUGUAGAGA 5'

 -15.60 2 RIC-seq
chrX:139865620:139865672:[+] chr15:25315612:25315665:[+] nonBSJ supported Intron

circRNA 5':CUUCCAAUAAUUUCAA-GGUCUUCCAUCAAAUACAGAUCUUCCAGCUAAUCCAU 3'


            |||| ||| || |: || ||||| ||||


target  3':CAAGGCUACUCUUGCUGCCAUACUCAAGAGUGAGUAAAACAAGUCGAAAAGGUU 5'

 -16.90 3 RIC-seq
chrX:139866168:139866178:[+] chr15:25299361:25299371:[+] nonBSJ supported Intron

circRNA 5':CCUUGUCUUCC 3'


            ||::|| ||


target  3':UGAGUAGUAGC 5'

 -6.50 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:25223884:25223910:[+] target - chr15:25223907-25223908 T>A RECA-EU ICGC
chr15:25223887:25223910:[+] target - chr15:25223907-25223908 T>A RECA-EU ICGC
chrX:139866580:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC