Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865753:139865791:[+] chr5:111497887:111497934:[+] nonBSJ supported Exon

circRNA 5': CAGU-CAA-UCAGUGUCUUCCAGAAAGAA------AUCCAGGU--CUUC 3'


            |||| | |||| ||:||||||| |||||||: ||:


target  3':AGUCAUGAGGAGUCU--GAGGGUCUUUAAAGUUUACUAGGUCCGUUGAGA 5'

 -31.70 1 RIC-seq
chrX:139865791:139865848:[+] chr5:111497859:111497934:[+] nonBSJ supported Exon

circRNA 5':CCAGU-CAA-UCAGUGUCUUCCAGAAAGAA------AUCCAGGU----CUUCC--AG-UCAG----UCAGUGUCUUC 3'


            |||| | |||| ||:||||||| |||||||: ||| || |||: |||: :||:||


target  3':AGUCAUGAGGAGUCU--GAGGGUCUUUAAAGUUUACUAGGUCCGUUGAGAACACUUCUAGUUUAAAAGUUUUAGGAGU 5'

 -39.50 4 RIC-seq
chrX:139865791:139865849:[+] chr5:111497859:111497934:[+] nonBSJ supported Exon

circRNA 5':CCAGU-CAA-UCAGUGUCUUCCAGAAAGAA------AUCCAGGU----CUUCC--AG-UCAG----UCAGUGUCUUCC 3'


            |||| | |||| ||:||||||| |||||||: ||| || |||: |||: :||:||


target  3':AGUCAUGAGGAGUCU--GAGGGUCUUUAAAGUUUACUAGGUCCGUUGAGAACACUUCUAGUUUAAAAGUUUUAGGAGU 5'

 -40.30 8 RIC-seq
chrX:139865791:139865849:[+] chr5:111497860:111497934:[+] nonBSJ supported Exon

circRNA 5':CCAGU-CAA-UCAGUGUCUUCCAGAAAGAA------AUCCAGGU----CUUCC--AG-UCAG----UCAGUGUCUUCC 3'


            |||| | |||| ||:||||||| |||||||: ||| || |||: |||: :||:||


target  3':AGUCAUGAGGAGUCU--GAGGGUCUUUAAAGUUUACUAGGUCCGUUGAGAACACUUCUAGUUUAAAAGUUUUAGGAG 5'

 -40.30 13 RIC-seq
chrX:139865791:139865858:[+] chr5:111497862:111497934:[+] nonBSJ supported Exon

circRNA 5':CCAGU-CAA-UCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAG-UCA-GUGUCUUCCAGA-----AAAAUC 3'


            |||| | |||| ||:||||||| ||::| ||||| ||: || ||| ||:| ||||||


target  3':AGUCAUGAGGAGUCU--GAGGGUCUUUAAA---GUUUACUAGGUCCGUUGAGAACACUUCUAGUUUAAAAGUUUUAGG 5'

 -37.50 2 RIC-seq
chrX:139865798:139865825:[+] chr5:111497913:111497935:[+] nonBSJ supported Exon

circRNA 5':AUCAGUGUCUUC-CAGAAAGAAAUCCAGG 3'


            |||||: ||:| |||| :||||


target  3':CAGUCAU-GAGGAGUCUGA----GGGUC 5'

 -20.50 1 RIC-seq