Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865413:139865455:[+] chr3:73160237:73160269:[+] nonBSJ supported Exon

circRNA 5':UCUCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAGAAAAUCCAC 3'


            ||| ||||| |||: || ||||: |||:|||


target  3': GAGGAU---AAGGUAG---AGGGA-CG-AGGUU-UUUGGGUA 5'

 -25.50 2 RIC-seq
chrX:139865418:139865454:[+] chr3:73160237:73160270:[+] nonBSJ supported Exon

circRNA 5':AGGUCU---UCCAGAUAAUCCUGAGCUUCCAGAAAAUCCA 3'


            | ||: |||| |||: || ||||: |||:|||


target  3': CGAGGAUAAGGUAG---AGGGA-CG-AGGUU-UUUGGGUA 5'

 -25.70 1 RIC-seq
chrX:139865418:139865455:[+] chr3:73160237:73160270:[+] nonBSJ supported Exon

circRNA 5':AGGUCU---UCCAGAUAAUCCUGAGCUUCCAGAAAAUCCAC 3'


            | ||: |||| |||: || ||||: |||:|||


target  3': CGAGGAUAAGGUAG---AGGGA-CG-AGGUU-UUUGGGUA 5'

 -26.00 12 RIC-seq