Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865552:139865590:[+] chr2:238471837:238471867:[+] nonBSJ supported Exon

circRNA 5':AGCAAUUACUGGUCUUCCACCAAAUCCAGAUCU-UCCAGG 3'


            || ||::||||| || ||| ||||:


target  3': CGGUAC-GAUUAGAAG-------AGACAUAGCCAGGUUA 5'

 -14.50 1 RIC-seq
chrX:139865988:139866000:[+] chr2:238471836:238471849:[+] nonBSJ supported Exon

circRNA 5':AUGUCU-UCCAGUA 3'


            |:|| ||||:|


target  3':CAUAGCCAGGUUAA 5'

 -8.10 1 RIC-seq
chrX:139866647:139866703:[+] chr2:238471837:238471874:[+] nonBSJ supported Exon

circRNA 5':AGCA----UC-UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU-UCCAGC 3'


            ||| :| |||| :||| |||||||:|| ||||:


target  3':GCGUCCCCGGUACGAUUAGA-------------------------AGAGACAUAGCCAGGUUA 5'

 -26.30 1 RIC-seq
chrX:139866648:139866703:[+] chr2:238471837:238471868:[+] nonBSJ supported Exon

circRNA 5': GCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU-UCCAGC 3'


            || |||| :||| |||||||:|| ||||:


target  3':CCGGU-ACGAUUAGA-------------------------AGAGACAUAGCCAGGUUA 5'

 -25.60 1 RIC-seq
chrX:139866653:139866703:[+] chr2:238471837:238471863:[+] nonBSJ supported Exon

circRNA 5':UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU-UCCAGC 3'


           |||| :||| |||||||:|| ||||:


target  3':ACGAUUAGA-------------------------AGAGACAUAGCCAGGUUA 5'

 -23.70 1 RIC-seq
chrX:139866675:139866703:[+] chr2:238471837:238471859:[+] nonBSJ supported Exon

circRNA 5':CGUCUUCCAGCAUCUCUGUGUCU-UCCAGC 3'


            |||| |||||||:|| ||||:


target  3':UUAGA-------AGAGACAUAGCCAGGUUA 5'

 -19.90 2 RIC-seq
chrX:139866686:139866703:[+] chr2:238471837:238471855:[+] nonBSJ supported Exon

circRNA 5':AUCUCUGUGUCU-UCCAGC 3'


            |||||||:|| ||||:


target  3':AAGAGACAUAGCCAGGUUA 5'

 -19.80 1 RIC-seq