Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866686:139866703:[+] chr20:61968723:61968741:[+] nonBSJ supported Exon

circRNA 5':AUCUCUGUGUC-UUCCAGC 3'


            |||||||:|| |||||:


target  3':AAGAGACAUAGCAAGGUUA 5'

 -22.00 3 RIC-seq
chrX:139866687:139866703:[+] chr20:61968723:61968741:[+] nonBSJ supported Exon

circRNA 5': UCUCUGUGUC-UUCCAGC 3'


            |||||||:|| |||||:


target  3':AAGAGACAUAGCAAGGUUA 5'

 -22.00 36 RIC-seq
chrX:139866776:139866806:[+] chr20:61968725:61968752:[+] nonBSJ supported Exon

circRNA 5':GUGUGCUGAUCUUCUGACAUUCAGGUC-UUCC 3'


            |:||||:||||||| :|| ||||


target  3':GAUACGAUUAGAAGAGACA-----UAGCAAGGU 5'

 -22.80 2 RIC-seq
chrX:139866776:139866807:[+] chr20:61968724:61968752:[+] nonBSJ supported Exon

circRNA 5':GUGUGCUGAUCUUCUGACAUUCAGGUC-UUCCA 3'


            |:||||:||||||| :|| |||||


target  3':GAUACGAUUAGAAGAGACA-----UAGCAAGGUU 5'

 -24.60 1 RIC-seq
chrX:139866776:139866808:[+] chr20:61968724:61968752:[+] nonBSJ supported Exon

circRNA 5':GUGUGCUGAUCUUCUGACAUUCAGGUC-UUCCAG 3'


            |:||||:||||||| :|| |||||


target  3':GAUACGAUUAGAAGAGACA-----UAGCAAGGUU 5'

 -25.40 8 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866776:139866806:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866776:139866807:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866776:139866808:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC