Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865781:139865835:[+] chr10:103124634:103124686:[-] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAG----GUCUUCCAGUC 3'


            ||||||| | || |||| || ||| ||| :|||:|| |:


target  3':UGGUCCAGCUA--C-GUACCUCACCUGCC-UCGUUCG--AGGAUAAGGUAGAGGGACGA 5'

 -25.30 1 RIC-seq
chrX:139865781:139865853:[+] chr10:103124634:103124691:[-] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAA 3'


            ||||||| | || |||| || ||| ||| ||||| || ||: ||||:|


target  3':UGGUCCAGCUA--C-GUACCUCACCUGCC-UCGUUCG--AGGAU---AAGGUAG---AGGGACG--AGGUUU 5'

 -29.30 1 RIC-seq
chrX:139865875:139865927:[+] chr10:103124635:103124686:[-] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUC-CAGUCAAUCCACAUCUUCCGGAA-AAAAUCCAG----GUCUUCCAGC 3'


            ||||||| || |||| || ||| :|||:|| ||


target  3': GGUCCAGCUACGUACCUCACCU-------GCCUCGUUCGAGGAUAAGGUAGAGGGACGA 5'

 -25.60 2 RIC-seq
chrX:139866329:139866377:[+] chr10:103124634:103124683:[-] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUC-CA-GGAAAUCCGUGUCUUCCAGCAAA-UCCA----CGUCUUCCA 3'


            ||||||| || ||| ||| ||||| ||| |:|||:||


target  3':UGGUCCAGCUACGUACCU-----CACCUGCC-UCGUUCGAGGAUAAGGUAGAGGGA 5'

 -33.40 1 RIC-seq
chrX:139866666:139866708:[+] chr10:103124661:103124697:[-] nonBSJ supported Exon

circRNA 5':ACAU-CUCCACGUCUUCCAGCAUCUCUGUGUCUUCCAGC-AUCUU 3'


            || |||| ||||| ||||: ||: ||||: ||||


target  3':CGUUCGAGGAU---AAGGU---AGAGGGACG--AGGUUUUUAGAU 5'

 -25.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865875:139865927:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC