Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865335:139865367:[+] chr11:62609175:62609224:[-] nonBSJ supported Exon

circRNA 5':UCCAGGGUUUCC-------------------GAUGGCACCUGUGUCAAGGUC 3'


           ||||::: ||| |||:| :||:|| ||:|


target  3':AGGUUUUU-AGGUAAAUUAUAUAACAGGAGCCUAUCUCCUGCAUAG-UCUAU 5'

 -17.20 1 RIC-seq
chrX:139865781:139865833:[+] chr11:62609124:62609166:[-] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAG 3'


            ||||||| || |||| || ||| ||| |||||


target  3': GGUCCAGCUACGCACC---UCACCUGCC-UCGUUCG--AGGAU---AAGGUA 5'

 -20.30 1 RIC-seq
chrX:139865820:139865843:[+] chr11:62609124:62609144:[-] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCCAGUCAGUCAGUG 3'


            ||||||| || ||||


target  3': GGUCCAGCUACGCACC---UCACC 5'

 -13.50 2 RIC-seq
chrX:139866606:139866659:[+] chr11:62609160:62609205:[-] nonBSJ supported Exon

circRNA 5':CUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGU 3'


            |||| |||||| :| |||||: | |||| ||||


target  3':UAAGG---UAGAGGA-UA-AAGGUU-UUUAGGUAAAUUAUAUAACAG--GAGCC 5'

 -24.40 2 RIC-seq