Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866353:[+] chr11:62609097:62609139:[-] nonBSJ supported Exon

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUU---------CCAGGAAAUC-CGUGU 3'


            || ||| ||| || ||||| ||||


target  3':ACGU-GGCA----AGGACCUUCAUGACGUUAUGGUCCAGCUACGCACC 5'

 -18.40 19 RIC-seq
chrX:139866527:139866574:[+] chr11:62609162:62609204:[-] nonBSJ supported Exon

circRNA 5':GCCAUGUCU----UCCAGAAAAUCCACGUCUUCCAGAAAAUAUA-UGUCUUCC 3'


            |||| ||: ||||:||| |||| |||||| ||||:||


target  3':AGGUAGAGGAUAAAGGUUUUU----------AGGUAAAUUAUAUAACAGGAGC 5'

 -31.20 10 RIC-seq
chrX:139866527:139866574:[+] chr11:62609168:62609204:[-] nonBSJ supported Exon

circRNA 5':GCCAUGUCUUCCAGAAAAUCCACGUCUUCCAGAAAAUAUA-UGUCUUCC 3'


            || |:| |||||:||| |||| |||||| ||||:||


target  3':AGG-AUA-AAGGUUUUU----------AGGUAAAUUAUAUAACAGGAGC 5'

 -26.10 1 RIC-seq
chrX:139866612:139866639:[+] chr11:62609163:62609187:[-] nonBSJ supported Exon

circRNA 5':AUAUCUCCAGGUCUUCCAGCAUCUCCAG 3'


            ||||||| :| |||||: | ||||


target  3':GGUAGAGGA-UA-AAGGUU-UUUAGGUA 5'

 -18.30 15 RIC-seq
chrX:139866666:139866700:[+] chr11:62609163:62609204:[-] nonBSJ supported Exon

circRNA 5':ACAUCUCCACG-UCU-----UCCAGCAUCUCUG-UGUCUUCC 3'


            ||||||| ||: |||| ||||:||


target  3':GGUAGAGGAUAAAGGUUUUUAGGUAAAUUAUAUAACAGGAGC 5'

 -25.10 16 RIC-seq
chrX:139866678:139866718:[+] chr11:62609160:62609204:[-] nonBSJ supported Exon

circRNA 5':CUUCCAGCAUCUCUGUGUCU-----UCCAGCAUCUUCA-UGUCUUCC 3'


            ||||| || ||:| ||: |||| ||||:||


target  3':UAAGGUAG-AG-GAUAAAGGUUUUUAGGUAAAUUAUAUAACAGGAGC 5'

 -23.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC