5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865353:139865394:[+] | chr11:62609106:62609137:[-] | nonBSJ supported | Exon |
circRNA 5':ACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGA 3' |||| | ||| || ||| ||:|||| ||| target 3': GGAC-C--UUCAUGAC----GUUAUGGUCCAGCUA--CGCA 5' |
-21.80 | 1 | RIC-seq |
| chrX:139865513:139865534:[+] | chr11:62609173:62609204:[-] | nonBSJ supported | Exon |
circRNA 5':CUUCCAGUAAAUCAA-----------GUCUUCC 3' |||||: ||||| |||:|| target 3':AAAGGUU-UUUAGGUAAAUUAUAUAACAGGAGC 5' |
-14.20 | 1 | RIC-seq |
| chrX:139865523:139865544:[+] | chr11:62609167:62609187:[-] | nonBSJ supported | Exon |
circRNA 5':AUCAAGUCUUCCAGCAAAUCCA 3' || :| |||||: ||||||| target 3':GAGGAUA-AAGGUU-UUUAGGUA 5' |
-13.70 | 2 | RIC-seq |
| chrX:139865632:139865647:[+] | chr11:62609150:62609168:[-] | nonBSJ supported | Exon |
circRNA 5':UCAAGGUCU---UCCAUCA 3' |||| ||: |||||| target 3':CGUUCGAGGAUAAGGUAGA 5' |
-16.00 | 1 | RIC-seq |
| chrX:139865661:139865709:[+] | chr11:62609148:62609186:[-] | nonBSJ supported | Exon |
circRNA 5':CAGCUAA-UCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAA 3' ||| ||| |:| |||| ||| : ||||| ||||||| target 3':CUCGUUCGAGG-AUA--AGGU------AGAGGAUAAAGGUU-UUUAGGU 5' |
-23.50 | 3 | RIC-seq |
| chrX:139865677:139865718:[+] | chr11:62609123:62609165:[-] | nonBSJ supported | Exon |
circRNA 5':UCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAG-UCU---UCCAG 3' |||| ||:|| |||| ||: |||| target 3':UGGUCCAGCU--ACGCACCUCACCUGCCUCGUUCGAGGAUAAGGU 5' |
-15.40 | 1 | RIC-seq |
| chrX:139865677:139865718:[+] | chr11:62609123:62609166:[-] | nonBSJ supported | Exon |
circRNA 5':UCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAG-UCU---UCCAG 3' |||| ||:|| |||| ||: |||| target 3':UGGUCCAGCU--ACGCACCUCACCUGCCUCGUUCGAGGAUAAGGUA 5' |
-15.40 | 1 | RIC-seq |
| chrX:139865687:139865709:[+] | chr11:62609161:62609187:[-] | nonBSJ supported | Exon |
circRNA 5': UCUGUGUCU----UCCACCAAAUCCAA 3' ||::| ||: |||| ||||||| target 3':AAGGUAGAGGAUAAAGGUU-UUUAGGUA 5' |
-17.50 | 1 | RIC-seq |
| chrX:139865749:139865778:[+] | chr11:62609173:62609211:[-] | nonBSJ supported | Exon |
circRNA 5':CUUCCAGUCAAUCAG----------UGUCUUCCAGAAAGA 3' |||||: |||| ||||:|| || ||| target 3':AAAGGUUU-UUAGGUAAAUUAUAUAACAGGAGC-CUAUCUC 5' |
-16.20 | 1 | RIC-seq |
| chrX:139865820:139865844:[+] | chr11:62609124:62609144:[-] | nonBSJ supported | Exon |
circRNA 5':UCCAGGUCUUCCAGUCAGUCAGUGU 3' ||||||| || |||| target 3': GGUCCAGCUACGCACC---UCACC 5' |
-14.20 | 1 | RIC-seq |
| chrX:139865976:139866007:[+] | chr11:62609124:62609159:[-] | nonBSJ supported | Exon |
circRNA 5':UCCAGAAAAUCCAUGUCUUCC--------AGUAACCUCCC 3' |||| || |||: ||:|| |||| target 3': GGUCC---AGCUACGCACCUCACCUGCCUCGUUCGAGGA 5' |
-12.50 | 2 | RIC-seq |
| chrX:139866169:139866229:[+] | chr11:62609195:62609220:[-] | nonBSJ supported | Exon |
circRNA 5':CUUGUCUUCCCUUAAAUCUAUAGCUUCCAAAAAAUCCGGGUCUUCCAGGAAAUCCGUGUCU 3' |||||:|| ||:| |||| |||:|| target 3':UAACAGGAG----------------------------CCUAUC---UCCU----GCAUAGU 5' |
-18.10 | 1 | RIC-seq |
| chrX:139866231:139866249:[+] | chr11:62609239:62609260:[-] | nonBSJ supported | Exon |
circRNA 5':CCAGCAAGUCCAC---GUCUUC 3' ||| | | ||| :|||| target 3':UGUCUAUGAUGUGAACUAGAAU 5' |
-6.10 | 2 | RIC-seq |
| chrX:139866329:139866368:[+] | chr11:62609123:62609159:[-] | nonBSJ supported | Exon |
circRNA 5':UCCAGGUCUUCCA--GGAAAUCCGUGUCUUCCAGCAAA-UCCA 3' ||||||| ||| ||| ||||| ||| target 3':UGGUCCAGCUACGCACCU-----CACCUGCC-UCGUUCGAGGA 5' |
-22.80 | 1 | RIC-seq |
| chrX:139866463:139866506:[+] | chr11:62609182:62609223:[-] | nonBSJ supported | Exon |
circRNA 5':UUCCAACAAAGGUA-UGUCUUCCAACAAAGGUACGUCUUCCAGAA 3' |||| :|| ||||:|| ||| |||| |||| target 3':UAGGUAAAUUAUAUAACAGGAGCCUAUCUCC-UGCAUA--GUCUA 5' |
-22.90 | 3 | RIC-seq |
| chrX:139866547:139866591:[+] | chr11:62609212:62609254:[-] | nonBSJ supported | Exon |
circRNA 5':CACGUCUUCCAGAAAAUAUA-UGUCUUCCAACUAA-GCUACGUCUUC 3' |||| |||| || ||| :||||: ||| target 3':CUGCAUA--GUCUAUAAUUUGACUAUUC-UUGUCUAUGAUGU-GAAC 5' |
-12.00 | 1 | RIC-seq |
| chrX:139866617:139866666:[+] | chr11:62609123:62609166:[-] | nonBSJ supported | Exon |
circRNA 5':UCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAA 3' ||||||| || ||:| |||| |||| | ||||| target 3':UGGUCCAGCUA--CGCACCUCACCUGCC--UCGUU--CGAGGAUAAGGUA 5' |
-33.40 | 2 | RIC-seq |
| chrX:139866617:139866673:[+] | chr11:62609123:62609169:[-] | nonBSJ supported | Exon |
circRNA 5':UCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCC 3' ||||||| || ||:| |||| |||| | ||||| |||| target 3':UGGUCCAGCUA--CGCACCUCACCUGCC--UCGUU--CGAGGAUAAGGU---AGAG 5' |
-36.60 | 2 | RIC-seq |
| chrX:139866634:139866684:[+] | chr11:62609175:62609222:[-] | nonBSJ supported | Exon |
circRNA 5':CUCCAGGGCUUCCAGCAUCUGCUC-GUCUUCCAACAUCUCCACGUCUUCCAG 3' ||||::: |||| |||:|| |||| ||| target 3': AGGUUUUU-AGGUAAAUUAUAUAACAGGAGCCUAUCUCC-UGCAUA--GUCU 5' |
-18.50 | 2 | RIC-seq |
| chrX:139866637:139866649:[+] | chr11:62609209:62609222:[-] | nonBSJ supported | Exon |
circRNA 5':CAGGGC-UUCCAGC 3' |||:| | ||| target 3':CUCCUGCAUAGUCU 5' |
-7.40 | 1 | RIC-seq |
| chrX:139866769:139866792:[+] | chr11:62609153:62609173:[-] | nonBSJ supported | Exon |
circRNA 5': GUCUCCAGUGUGCUGAUCUUCUGA 3' | |||| |:| |: ||||:||: target 3':UC-GAGG--AUAAGG-UAGAGGAUA 5' |
-13.00 | 2 | RIC-seq |
| chrX:139866811:139866826:[+] | chr11:62609115:62609130:[-] | nonBSJ supported | Exon |
circRNA 5':UCUGCAAUAUCCAGGU 3' |||||||| |||||| target 3':UGACGUUAU-GGUCCAG 5' |
-20.90 | 3 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr11:62609212:62609254:[-] | target | - | chr11:62609244-62609245 | T>C | PRAD-CA | ICGC |
| chr11:62609239:62609260:[-] | target | - | chr11:62609244-62609245 | T>C | PRAD-CA | ICGC |