Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865510:139865527:[+] chrX:47918430:47918446:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGUAAAUCAA 3'


            |:||||| |||


target  3':CCGGAAGGGUGUC-AGUC 5'

 -11.50 14 RIC-seq
chrX:139865511:139865533:[+] chrX:47918377:47918398:[-] nonBSJ supported CDS

circRNA 5':GUCU-UCCAGUAAAUCAAGUCUUC 3'


            ||| ||||||| |||||||


target  3':AAGAGAGGUCAUAC--UUCAGAAA 5'

 -17.40 1 RIC-seq
chrX:139865511:139865569:[+] chrX:47918377:47918438:[-] nonBSJ supported CDS

circRNA 5':GUCU-UCCAGUAAAUCAAGUCUU------CCAGCAAAUCCAGUCUUCCAGCAAUUACUGGUCUUCC 3'


            ||| ||||||| ||||||| |||| | |||| ||:|||||


target  3':AAGAGAGGUCAUAC--UUCAGAAACUACCGGUCACUCCACACUGAAGACCCUUUU---CCGGAAGGG 5'

 -34.40 2 RIC-seq
chrX:139865511:139865570:[+] chrX:47918377:47918438:[-] nonBSJ supported CDS

circRNA 5':GUCU-UCCAGUAAAUCAAGUCUU------CCAGCAAAUCCAGUCUUCCAGCAAUUACUGGUCUUCCA 3'


            ||| ||||||| ||||||| |||| | |||| ||:|||||


target  3':AAGAGAGGUCAUAC--UUCAGAAACUACCGGUCACUCCACACUGAAGACCCUUUU---CCGGAAGGG 5'

 -35.80 17 RIC-seq
chrX:139866567:139866575:[+] chrX:47918598:47918606:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCA 3'


            |||||||


target  3':CCAGAAGGG 5'

 -11.40 14 RIC-seq