Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866668:139866719:[+] chr8:26228604:26228649:[+] nonBSJ supported 3UTR

circRNA 5':AUCUCCACGUCUUCCAGCAUCUCUGUGUCUUC------CAGCAUCUUCAUGUC-UUCCA 3'


            |||||| |||| |||| ||| ||||


target  3':AAGAGGUA-AGAA------------ACAGUGAAAAUAAGUCAUCAUCCAAAAAAAAGGA 5'

 -13.20 35 RIC-seq
chrX:139866668:139866719:[+] chr8:26228605:26228649:[+] nonBSJ supported 3UTR

circRNA 5':AUCUCCACGUCUUCCAGCAUCUCUGUGUCUUC------CAGCAUCUUCAUGUC-UUCCA 3'


            |||||| |||| |||| ||| ||||


target  3':AAGAGGUA-AGAA------------ACAGUGAAAAUAAGUCAUCAUCCAAAAAAAAGG 5'

 -13.40 1 RIC-seq
chrX:139866679:139866719:[+] chr8:26228604:26228647:[+] nonBSJ supported 3UTR

circRNA 5':UUCCAGCAUCUCUGUGUCUUC----CAGCAUCUUCAUGUC-UUCCA 3'


            |||| ||| ||| ||| ||| ||||


target  3':GAGGUA--AGAAACAGUGAAAAUAAGUCAUCAUCCAAAAAAAAGGA 5'

 -11.90 1 RIC-seq
chrX:139866704:139866732:[+] chr8:26228620:26228649:[+] nonBSJ supported 3UTR

circRNA 5':AUCUUCAUGUCUUCCA-ACAACUACCCAGU 3'


            |||:||| |||| || ||||


target  3':AAGAGGUA-AGAAACAGUGAAAAUAAGUCAU 5'

 -11.50 3 RIC-seq