Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865919:139865961:[+] chr6:129250933:129250978:[-] nonBSJ supported Exon

circRNA 5':UCUUCCAGCCAAUA-UAU---GUCUUCCU-GAAGAUCCACGUCUUCCA 3'


            ||||||:||| :|: ||||| |||||| |||: |||


target  3':UGAAGGUUGGUGUGGGUGUCUCAGAACCAUCUUCUA--UGCGUCAGGG 5'

 -33.80 1 RIC-seq
chrX:139865919:139865978:[+] chr6:129250933:129251010:[-] nonBSJ supported Exon

circRNA 5':UCUUCCAGCCAAUA-UAU---GUCUUCCU-GAAGAUCCACGUCUUCCA---------GAAAAU---CCAU--GUCUUCC 3'


            ||||||:||| :|: ||||| |||||| |||: ||| :||||: || | |||||


target  3':UGAAGGUUGGUGUGGGUGUCUCAGAACCAUCUUCUA--UGCGUCAGGGAACAUUCACUUUUUGAACGGACUUCUGAAGGU 5'

 -37.80 1 RIC-seq