Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866256:139866268:[+] chr4:183714262:183714274:[+] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCC 3'


            ||||::| ||


target  3':GCGGUGUAAUAGA 5'

 -10.80 3 RIC-seq
chrX:139866256:139866279:[+] chr4:183714230:183714274:[+] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCC-----------------------AGACUAUCCAU 3'


            ||||::| || || || ||||


target  3':GCGGUGUAAUAGAAAAGUAACUCCAUUUGACAAACCUC-GACAGGU 5'

 -12.40 1 RIC-seq
chrX:139866688:139866734:[+] chr4:183714372:183714434:[+] nonBSJ supported CDS

circRNA 5':CUCUGUGUCUUCC-----------AGCAUCUUCAUGUCUUCCAAC--------AAC--UACCCAGUCU 3'


            ||:|||:|:: | |||||||| |||||| ||| :||||||||


target  3':AAGGCACGGGGAAACUGCAUCCUUUGGUAGAAGU-----AGGUUGGCUAUAACUUGUAGUGGGUCAGC 5'

 -40.90 1 RIC-seq
chrX:139866700:139866734:[+] chr4:183714372:183714411:[+] nonBSJ supported CDS

circRNA 5':CAGCAUCUUCAUGUCUUCCAAC--------AAC--UACCCAGUCU 3'


            | |||||||| |||||| ||| :||||||||


target  3':UUGGUAGAAGU-----AGGUUGGCUAUAACUUGUAGUGGGUCAGC 5'

 -31.00 1 RIC-seq