Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865935:139865997:[+] chr9:30689477:30689538:[+] nonBSJ supported Exon

circRNA 5':UGUCUUCCU-GAAGAUC-CACGUC----UUCCA-GAAAAUCCA-UGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            ||| :||| ||||| | || || ||| ||| ||||| :||| |||| ||||:|||


target  3': CAG-GGGACCUUCUUGAGUACAAUUUUAAGUACCUUAUAGGUGGCAGUAGGUAC-------ACAGGAGGG 5'

 -39.90 1 RIC-seq
chrX:139866038:139866088:[+] chr9:30689441:30689493:[+] nonBSJ supported Exon

circRNA 5':AAUCCAA--GUCUUCCGGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUCCA 3'


            ||||| |||:||| :||||::| || ||:|| ||:|||


target  3':GUAGGUACACAGGAGGGGCACUCCCUCCAGGGGAACAAGGAGGUGAAGGAGGA 5'

 -44.40 1 RIC-seq