Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865400:139865423:[+] chrX:74964876:74964907:[-] nonBSJ supported Exon

circRNA 5': AGUCUUCCAAUAAUCUCAA--------GGUCU 3'


            | |||| |||||||| || ||:|


target  3':CUGAGAA-GUUAUUAGUGUAAUGAACACCCGGU 5'

 -14.50 1 RIC-seq
chrX:139865400:139865465:[+] chrX:74964854:74964922:[-] nonBSJ supported Exon

circRNA 5':AGUCUUCCAAUAAUCUCA---AGG-UCUUCCAGAUAAUC-CUGAGCUU-----CCAGAAAAUCCACAUCUUCCAGA 3'


            ||||| ||| ||: ||||| :|||||| | :||| |||: ||| |||||


target  3':GUAGAAAUAAAAAAGACCGACUCUGAGAAG--UUAUUAGUGUAAUGAACACCCGGUUCAAUU-GUG----AGGUCC 5'

 -23.50 1 RIC-seq
chrX:139865412:139865475:[+] chrX:74961798:74961862:[-] nonBSJ supported Exon

circRNA 5':AUCUCAAGGUCUUCCAGAUAAUC-----CUGA-GCUUC--CAGAAAAUCCACA--UCUUCCA-GACAAUC--CAUGU 3'


            |||| ||||||| || | || :|:|| ||| ||||| |||: ||| || |||:


target  3':GAGAG-----GAAGGUCAAA-AGUUCAUGCCUAUGGAGACGUC-----GGUGUCGAGAGACUACUGAGAGAAGUAU 5'

 -26.80 2 RIC-seq
chrX:139866079:139866101:[+] chrX:74963775:74963793:[-] nonBSJ supported Exon

circRNA 5':ACGUCUUCCAAAAAAGC-C-AUGUC 3'


            |:||| ||||| | ||||


target  3':AGUAGA------UUUCGUGAUACAU 5'

 -9.40 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:74961798:74961862:[-] target - chrX:74961858-74961859 T>C LAML-KR ICGC
chrX:74963775:74963793:[-] target - chrX:74963792-74963793 T>C LAML-KR ICGC