Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865847:139865909:[+] chr17:65027827:65027893:[+] nonBSJ supported CDS

circRNA 5':UCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGUCU-UCCAGUCAAUCCACAU-----------CUUCCGGAAA 3'


            ||||| || |||| ||||| ||| |:| |||||:|||


target  3': GGUCU-----GAGACUUCAGGUCAGUCAC--CCAGACAGGACGGGUAAGACUCACUCCGUCUUUGAAGGUCUUC 5'

 -29.70 1 RIC-seq
chrX:139865875:139865909:[+] chr17:65027827:65027893:[+] nonBSJ supported CDS

circRNA 5':UCCAGG-UCU----UCCAGUCAAU------------CCACAU-----------------CUUCCGGAAA 3'


            ||||: ||| |||||||| || ||| |||||:|||


target  3': GGUCUGAGACUUCAGGUCAGUCACCCAGACAGGACGG-GUAAGACUCACUCCGUCUUUGAAGGUCUUC 5'

 -28.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865847:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865875:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC