Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866660:139866683:[+] chr5:139937028:139937048:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAUCUCCACGUCUUCCA 3'


            |||| ||||||||| ||||


target  3':CGAGGCGGUAGAGGUG---AAGGC 5'

 -24.40 4 RIC-seq
chrX:139866660:139866686:[+] chr5:139937028:139937049:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAUCUCCACGUCUUCCAGCA 3'


            |||| ||||||||| |||| ||


target  3':CGAGGCGGUAGAGGUG---AAGG-CG 5'

 -26.60 40 RIC-seq
chrX:139866661:139866686:[+] chr5:139937028:139937049:[-] nonBSJ supported CDS

circRNA 5': UUCCAACAUCUCCACGUCUUCCAGCA 3'


            |||| ||||||||| |||| ||


target  3':CGAGGCGGUAGAGGUG---AAGG-CG 5'

 -26.40 1 RIC-seq
chrX:139866678:139866704:[+] chr5:139937028:139937049:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCAUCUCUGUGUCUUCCAGCA 3'


            |||| ||||||:: ||||| ||


target  3':CGAGGCGGUAGAGGU---GAAGG-CG 5'

 -23.30 1 RIC-seq