Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865752:139865818:[+] chr19:24309109:24309180:[+] nonBSJ supported CDS

circRNA 5':CCAGUCAA-UC---AGUGUC--UUC-CAGAAAGAAAUCCAGGUCUUCCA-GUCAA-UCAGUGU--CUUCCA-GAAAGAA 3'


            |||:| || | ||| ||| || |||| :| ||||| :|| |||||:| ||| :|||||


target  3':UGUCGGAAAAGAAUUGACAUUUAAGAGUAC------AGGUAUAAAAGGUAUAGAAGAGUCAUAACGAAAAACUUUUCU 5'

 -28.00 1 RIC-seq
chrX:139865752:139865819:[+] chr19:24309107:24309180:[+] nonBSJ supported CDS

circRNA 5':CCAGUCAA-UC---AGUGUC--UUC-CAGAAAGAAAUCCAGGUCUUCCA-GUCAA-UCAGUGU--CUUCCA-GAAAGAAA 3'


            |||:| || | ||| ||| || |||| :| ||||| :|| |||||:| ||| :||||||


target  3':UGUCGGAAAAGAAUUGACAUUUAAGAGUAC------AGGUAUAAAAGGUAUAGAAGAGUCAUAACGAAAAACUUUUCUUA 5'

 -28.90 1 RIC-seq
chrX:139865820:139865852:[+] chr19:24310003:24310037:[+] nonBSJ supported CDS

circRNA 5':UCCAGG-UCUUC-CAGUCAGUCAGUGUCU-UCCAGA 3'


            || ||||| || ||| ||| ||||:


target  3': GGCGUAAGAAGUGUAAACAUCUCAAAGAGAGGUUG 5'

 -15.50 1 RIC-seq
chrX:139865470:139865495:[+] chr19:24232253:24232283:[+] nonBSJ supported Intron

circRNA 5':CCAUGUCUU---CCGGACAA--UC-CAUGUCU 3'


            ||: ||| ||:|| || || ||||||


target  3':AGUG-AGACAACGGUCUAUUUCAGUGUACAGU 5'

 -15.10 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:24310003:24310037:[+] target - chr19:24310027-24310028 G>A BTCA-JP ICGC
chr19:24310003:24310037:[+] target - chr19:24310032-24310033 A>T LAML-KR ICGC
chr19:24310003:24310037:[+] target - chr19:24310035-24310036 C>T LICA-CN ICGC