Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866475:139866496:[+] chr1:214656441:214656458:[-] nonBSJ supported Exon

circRNA 5':UAUGUCUUCCAACAAAGGUACG 3'


            |||| |||| |||| :|||


target  3':UUACA-AAGG-UGUU--UAUGA 5'

 -11.00 1 RIC-seq
chrX:139866475:139866531:[+] chr1:214656441:214656479:[-] nonBSJ supported Exon

circRNA 5':UAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAGCCAU 3'


            |||| |||| |||| :||| ||:||| ||||


target  3':UUACA-AAGG-UGUU--UAUGAACUUAC---------UGUAGAUUUUA----CGGU 5'

 -16.50 10 RIC-seq
chrX:139866475:139866543:[+] chr1:214656441:214656498:[-] nonBSJ supported Exon

circRNA 5':UAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAA-CCAAGC-CAUG-UCUUCCAGAAA 3'


            |||| |||| |||| :||| ||:||| ||||| ||: ||| ||||


target  3':UUACA-AAGG-UGUU--UAUGAACUUAC---------UGUAGAUUUUACGGUUCAAGUGAAAGACU-UCUUA 5'

 -22.90 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:214656441:214656479:[-] target - chr1:214656476-214656477 G>A LAML-KR ICGC
chr1:214656441:214656498:[-] target - chr1:214656476-214656477 G>A LAML-KR ICGC