Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865832:139865851:[+] chr1:149514131:149514148:[-] nonBSJ supported Exon

circRNA 5':AGUCAGUCAGUGUCUUCCAG 3'


            | ||||| | || |:|||


target  3':AC-GUCAG-CUCAAAGGGUG 5'

 -13.30 22 RIC-seq
chrX:139865876:139865896:[+] chr1:149514123:149514146:[-] nonBSJ supported Exon

circRNA 5':CCAGGUCUUCCAGUCAA---UCCA 3'


            ||::| | ||||| |||


target  3':UGUUUAAUACGUCAGCUCAAAGGG 5'

 -10.40 1 RIC-seq
chrX:139866459:139866516:[+] chr1:149514110:149514150:[-] nonBSJ supported Exon

circRNA 5':CGUCUUCCAACAAAGGUAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUC 3'


            |||::||| || || ||||| || |: || || :||||||


target  3': CAGGGGGU------------GAUGG-UGUUUA-AUACGUCAGCUCAAA-GGGUGCA 5'

 -23.90 1 RIC-seq