Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865381:139865408:[+] chr1:17067118:17067155:[+] nonBSJ supported Exon

circRNA 5':GGGUCUUCCA--GCGACUUCA-----AGUC----UUCCA 3'


            ||||::||| :| || |||| ||||


target  3': UCAGGGGGUGAUGGUGUUUAAUACGUCAGCUCAAAGGG 5'

 -20.00 1 RIC-seq
chrX:139865381:139865409:[+] chr1:17067116:17067155:[+] nonBSJ supported Exon

circRNA 5':GGGUCUUCCA--GCGACUUCA-----AGUC-----UUCCAA 3'


            ||||::||| :| || |||| |:|||


target  3': UCAGGGGGUGAUGGUGUUUAAUACGUCAGCUCAAAGGGUG 5'

 -20.10 1 RIC-seq
chrX:139865754:139865787:[+] chr1:17067097:17067131:[+] nonBSJ supported Exon

circRNA 5': AGUCAAUCAGUGUCUUCCAGAAA--GAAAUC-CAGGU 3'


            |||| ||| ||:: || |||||| ||||


target  3':GUCAGC---UCAAAGGGUGUAAACCCCUUUAGCGUCCC 5'

 -18.90 3 RIC-seq
chrX:139865804:139865833:[+] chr1:17067116:17067155:[+] nonBSJ supported Exon

circRNA 5': GUCUUCCAGAA--AGAAAUCCA--GGUC-----UUCCAG 3'


            |||::||| | |||| :||| |:|||


target  3':UCAGGGGGUGAUGGUGUUUAAUACGUCAGCUCAAAGGGUG 5'

 -18.70 1 RIC-seq
chrX:139865927:139865961:[+] chr1:17067025:17067079:[+] nonBSJ supported Exon

circRNA 5':CCAAU--AUAUGUCUU-CCU---GAAGAUCCAC---------------GUCUUCCA 3'


            |||| ||| |:||: ||: |||:| |||| :|||:||


target  3':CGUUACCUAUUCGGAGCGGGACCCUUUU-GGUGGAAGCACUAGUACCAUAGAGGGG 5'

 -24.00 1 RIC-seq
chrX:139866319:139866358:[+] chr1:17067043:17067088:[+] nonBSJ supported Exon

circRNA 5':UUCCGAAA---AAUCC--AGGUCUU-CCA--GGAAAUCCGUGUCUUCC 3'


            |||| ||| |:|:||: || ||||| ||: :||||


target  3':UAGGCCUCACGUUACCUAUUCGGAGCGGGACCCUUUUGGU--GGAAGC 5'

 -22.20 4 RIC-seq
chrX:139866342:139866367:[+] chr1:17067084:17067110:[+] nonBSJ supported Exon

circRNA 5': GGAAAUCCGUGUCUUCCAGCAAAUCC 3'


            |||||| ||: ||||| ||||


target  3':CCCUUUA-GCGUCCCCAGUCGUGUAGGC 5'

 -20.30 3 RIC-seq
chrX:139866380:139866398:[+] chr1:17067046:17067071:[+] nonBSJ supported Exon

circRNA 5':AAAGCCAUGUCUU-------CCAUCA 3'


            ||||| :|:|:| |||:|


target  3':AUUCGGAGCGGGACCCUUUUGGUGGA 5'

 -18.30 2 RIC-seq