Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866557:139866611:[+] chr12:98115535:98115601:[+] nonBSJ supported Exon

circRNA 5':AGAAAAUAU---AUGUCUUC-CAACUAAGCUACGUCUUCCAA---CAAAU-CCAUGU----CUUC-CU 3'


            |||||||| |:| |||| | || ||| ||| || |||||: |||| ||


target  3':AUUUUUAUACCUUGC-GAAGUGCUUAAACGCA-CAGUAGGAACGCGUCCCCGGUACGAUUAGAAGAGAC 5'

 -23.20 1 RIC-seq
chrX:139866557:139866612:[+] chr12:98115535:98115601:[+] nonBSJ supported Exon

circRNA 5':AGAAAAUAU---AUGUCUUC-CAACUAAGCUACGUCUUCCAA---CAAAU-CCAUGU----CUUC-CUA 3'


            |||||||| |:| |||| | || ||| ||| || |||||: |||| ||


target  3':AUUUUUAUACCUUGC-GAAGUGCUUAAACGCA-CAGUAGGAACGCGUCCCCGGUACGAUUAGAAGAGAC 5'

 -23.70 1 RIC-seq
chrX:139866557:139866617:[+] chr12:98115530:98115601:[+] nonBSJ supported Exon

circRNA 5':AGAAAAUAU---AUGUCUUC-CAACUAAGCUACGUCUUCCAA---CAAAU-CCAUGU----CUUC-CUAUAUCU 3'


            |||||||| |:| |||| | || ||| ||| || |||||: |||| || ||||


target  3':AUUUUUAUACCUUGC-GAAGUGCUUAAACGCA-CAGUAGGAACGCGUCCCCGGUACGAUUAGAAGAGACAUAGC 5'

 -27.70 25 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866557:139866611:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866557:139866612:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866557:139866617:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC