Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866232:139866271:[+] chr11:2991047:2991081:[-] nonBSJ supported CDS

circRNA 5': CAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUU-CCAGA 3'


            ||||| ||||||:| ||| ||| ||| ||||


target  3':AGUCGUACAGGUGUA-AAGAC---UUC--UACCAUUUGGUC 5'

 -25.40 1 RIC-seq
chrX:139866232:139866272:[+] chr11:2991047:2991082:[-] nonBSJ supported CDS

circRNA 5': CAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUU-CCAGAC 3'


            ||||| ||||||:| ||| ||| ||| |||||


target  3':AGUCGUACAGGUGUA-AAGAC---UUC--UACCAUUUGGUCU 5'

 -26.70 12 RIC-seq
chrX:139866636:139866670:[+] chr11:2981082:2981133:[-] nonBSJ supported CDS

circRNA 5':CCAGGGCUUCCAGCAUCUGCUCGUC------------------UUCCAACAUC 3'


            ||||:|| ||| :|| ||||:


target  3':AGUCCUGACUCAACCAUUUCAUCAGCAACCCAAGUUUCACCUUGAGAUUGUG 5'

 -13.30 8 RIC-seq
chrX:139866636:139866670:[+] chr11:2981082:2981134:[-] nonBSJ supported CDS

circRNA 5':CCAGGGCUUCCAGCAUCUGCUCGUC------------------UUCCAACAUC 3'


            ||||:|| ||| :|| ||||:


target  3':AGUCCUGACUCAACCAUUUCAUCAGCAACCCAAGUUUCACCUUGAGAUUGUGU 5'

 -13.70 12 RIC-seq
chrX:139866636:139866670:[+] chr11:2981083:2981133:[-] nonBSJ supported CDS

circRNA 5':CCAGGGCUUCCAGCAUCUGCUCGUC------------------UUCCAACAUC 3'


            ||||:|| ||| :|| ||||:


target  3': GUCCUGACUCAACCAUUUCAUCAGCAACCCAAGUUUCACCUUGAGAUUGUG 5'

 -12.10 1 RIC-seq
chrX:139866636:139866670:[+] chr11:2981083:2981134:[-] nonBSJ supported CDS

circRNA 5':CCAGGGCUUCCAGCAUCUGCUCGUC------------------UUCCAACAUC 3'


            ||||:|| ||| :|| ||||:


target  3': GUCCUGACUCAACCAUUUCAUCAGCAACCCAAGUUUCACCUUGAGAUUGUGU 5'

 -12.50 1 RIC-seq
chrX:139866636:139866688:[+] chr11:2981082:2981134:[-] nonBSJ supported CDS

circRNA 5':CCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUC 3'


            ||||:|| ||| | :|| |:||:


target  3':AGUCCUGACUCAACCAUUUCAUCAGCAACCCAAGUUUCACCUUGAGAUUGUGU 5'

 -14.60 1 RIC-seq