Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865464:139865490:[+] chr6:30587563:30587586:[+] nonBSJ supported CDS

circRNA 5':GACAAUCCAUGUCUUCCGGACAAUCCA 3'


            ||||| |||||||||||: |||


target  3':GUGUUAUGUACAGAAGGCUC---AGGC 5'

 -26.20 1 RIC-seq
chrX:139865470:139865490:[+] chr6:30587563:30587580:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCGGACAAUCCA 3'


            |||||||||||: |||


target  3':UGUACAGAAGGCUC---AGGC 5'

 -21.40 2 RIC-seq
chrX:139865472:139865490:[+] chr6:30587563:30587577:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCA 3'


            |||||||||: |||


target  3': ACAGAAGGCUC---AGGC 5'

 -17.00 1 RIC-seq
chrX:139866777:139866804:[+] chr6:30587563:30587582:[+] nonBSJ supported CDS

circRNA 5':UGUGC-UGAUCUUCUGACAUUCAGGUCUU 3'


            ||:| || |||||:|| |||:


target  3': UAUGUAC-AGAAGGCU-------CAGGC 5'

 -14.70 11 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866777:139866804:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC