Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865632:139865692:[+] chr6:32939532:32939577:[+] nonBSJ supported 5UTR

circRNA 5':UCAAGGUCUUCCAUCAAAUACAGAUCUUCCAGCUAAUCCAUGU-CU-UCCAGAAAAAU-CUGUG 3'


            |||:||||||| |||| ||||||: | :|||: |||:


target  3':UGUUUCAGAAGGGU----------------UCGA--AGGUACGUGUCGGGUUGACCUCUGACGG 5'

 -34.00 2 RIC-seq
chrX:139866581:139866624:[+] chr6:32947773:32947819:[+] nonBSJ supported CDS

circRNA 5':GCUACG--UCUUCCAACAAAUC--CAUGUCUUCCUAUAUCUCCA-GGUC 3'


            || ||||| ||:|| |||| ||:


target  3':AGAGUUAGAGAAGACCCAAACUUAGUGCAUUUCUCCC--GAGGGACCGA 5'

 -14.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866581:139866624:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC