Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866060:139866106:[+] chr2:233724686:233724714:[+] nonBSJ supported 3UTR

circRNA 5':UGGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUCUUCCA 3'


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target  3':CCCCAACGUCCCUCUCC-----------------CGGUAC-GAGGGA 5'

 -18.60 2 RIC-seq
chrX:139866093:139866106:[+] chr2:233724686:233724698:[+] nonBSJ supported 3UTR

circRNA 5':AGCCAUGUCUUCCA 3'


            |||||| ||:||


target  3':CCGGUAC-GAGGGA 5'

 -18.20 1 RIC-seq
chrX:139865784:139865795:[+] chr2:233674495:233674506:[+] nonBSJ supported CDS

circRNA 5':AGGU-CUUCCAGU 3'


            ||| || |||


target  3':ACCAUGAC-GUCC 5'

 -5.80 11 RIC-seq