Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865340:139865368:[+] chrX:139854360:139854395:[+] nonBSJ supported Exon

circRNA 5': GGUUUCC--GAUG-GCACC-UGUGUCAAGG-UCU 3'


            ||| | :|: ||| :|| :|||:| |||


target  3':ACCACUGAACUUGAACGUAUAGCAAGGUUUCGAGAG 5'

 -13.00 1 RIC-seq
chrX:139865340:139865369:[+] chrX:139854359:139854395:[+] nonBSJ supported Exon

circRNA 5': GGUUUCC--GAUG-GCACC-UGUGUCAAGG-UCUU 3'


            ||| | :|: ||| :|| :|||:| |||:


target  3':ACCACUGAACUUGAACGUAUAGCAAGGUUUCGAGAGU 5'

 -14.10 5 RIC-seq
chrX:139865340:139865371:[+] chrX:139854359:139854395:[+] nonBSJ supported Exon

circRNA 5': GGUUUCC--GAUG-GCACC-UGUGUCAAGGUCUUCC 3'


            ||| | :|: ||| :|| :|||:|: :||


target  3':ACCACUGAACUUGAACGUAUAGCAAGGUUUCGAGAGU 5'

 -14.60 1 RIC-seq
chrX:139865346:139865394:[+] chrX:139854350:139854398:[+] nonBSJ supported Exon

circRNA 5':CGAUGGC-ACCUG----UGUCAAGGUC-UUCCAACAA-CUCC-GGGUCUUCCAGCGA 3'


            ||||| || || || || :|| |||||| ||| :||: |||


target  3':CCUACCACUGAACUUGAAC-GUA-UAGCAAGGUUUCGAGAGUUUCCG------CGCC 5'

 -23.20 2 RIC-seq
chrX:139865346:139865374:[+] chrX:139854366:139854398:[+] nonBSJ supported Exon

circRNA 5':CGAUGGC-ACCUG----UGUCAAGGUC-UUCCAAC 3'


            ||||| || || || || :|| ||||||


target  3':CCUACCACUGAACUUGAAC-GUA-UAGCAAGGUUU 5'

 -15.00 4 KARR-seq