5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866365:139866395:[+] | chrX:139793785:139793822:[+] | nonBSJ supported | CDS |
circRNA 5':UCCACGUCUUCCAACAAAGCCAUGUCU---------UCCA 3' ||| |||| || |||||||| ||| target 3': GGUAAACUAGGUCCUUAAGGUACAGAUGCUUAAAAAGG 5' |
-20.40 | 1 | RIC-seq |
| chrX:139865340:139865363:[+] | chrX:139816098:139816123:[+] | nonBSJ supported | Exon |
circRNA 5': GGUUUCC-GAUGGCACCUGUGU-CAA 3' |||: | ||||| :|||: || target 3':ACCAGUGAUCCACCGUUUGCACGUGU 5' |
-16.70 | 1 | RIC-seq |
| chrX:139865340:139865365:[+] | chrX:139854355:139854395:[+] | nonBSJ supported | Exon |
circRNA 5': GGU-------------------UUCCGAUGGCACCUGUGUCAAGG 3' ||| ||||:| :|| | ||||:| target 3':ACCACUGAACUUGAACGUAUAGCAAGGUU-UCG-----AGAGUUUCC 5' |
-12.70 | 1 | RIC-seq |
| chrX:139865340:139865370:[+] | chrX:139854359:139854395:[+] | nonBSJ supported | Exon |
circRNA 5': GGUUUCC--GAUG-GCACC-UGUGUCAAGG-UCUUC 3' ||| | :|: ||| :|| :|||:| |||: target 3':ACCACUGAACUUGAACGUAUAGCAAGGUUUCGAGAGU 5' |
-14.40 | 2 | RIC-seq |
| chrX:139865340:139865373:[+] | chrX:139854377:139854413:[+] | nonBSJ supported | Exon |
circRNA 5': GGUUUCCGAUGGCACCU--GUGUCAAGGUCUUCCAA 3' ||| ::|| ||| | |: ||| || target 3':UCCAUCGUUCUUUGUCCUACCACUGAACUUGAACGUA 5' |
-8.30 | 2 | RIC-seq |
| chrX:139865340:139865390:[+] | chrX:139816051:139816123:[+] | nonBSJ supported | Exon |
circRNA 5': GGUUUCC-GAUGGCACCUGUGUCAAGG-----------UCUUCCAACAA----------CUCCGGGUCUUCCA 3' |||: | ||||| :|||: ||| |||||| ||| ::|||||| target 3':ACCAGUGAUCCACCGUUUGCACGUGUCCCGUGCUUCGGGAGAAGGGUAAGAACGUGAGACGAGAGUUAGAAGG 5' |
-38.40 | 2 | RIC-seq |
| chrX:139865340:139865390:[+] | chrX:139816078:139816123:[+] | nonBSJ supported | Exon |
circRNA 5': GGUUUCC-GAUGGCACCUGUGU-CAAGGUCUUCCAAC-AACUCCGGGUCUUCCA 3' |||: | ||||| :|||: || ||: || || :|| |||||| target 3':ACCAGUGAUCCACCGUUUGCACGUGUCCCG------UGCUUCGGG---AGAAGGG 5' |
-28.70 | 1 | RIC-seq |
| chrX:139865346:139865360:[+] | chrX:139854499:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACCUGUGU 3' ||:::||| |||| target 3':ACUGUUGUGCACAC 5' |
-14.00 | 2 | RIC-seq |
| chrX:139865346:139865367:[+] | chrX:139854487:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACC--UGUG-UCAA-GGUC 3' ||:::||| |||| |||| ||: target 3':ACUGUUGUGCACACACUAGUUACCGA 5' |
-19.70 | 1 | RIC-seq |
| chrX:139865346:139865368:[+] | chrX:139854493:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACCUGUGUCAAGGUCU 3' ||:::||| ||||| |:|| target 3':ACUGUUGUGCACACA---CUAGU 5' |
-18.40 | 1 | RIC-seq |
| chrX:139865346:139865374:[+] | chrX:139854366:139854398:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGC-ACCUG----UGUCAAGGUC-UUCCAAC 3' ||||| || || || || :|| |||||| target 3':CCUACCACUGAACUUGAAC-GUA-UAGCAAGGUUU 5' |
-15.00 | 2 | RIC-seq |
| chrX:139865346:139865377:[+] | chrX:139854473:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACC--UGUG-UCAA-GGUCUUC----CAACAAC 3' ||:::||| |||| |||| ||: |||||| target 3':ACUGUUGUGCACACACUAGUUACCGACGUCUCCGUUGUUA 5' |
-22.00 | 2 | RIC-seq |
| chrX:139865346:139865380:[+] | chrX:139854361:139854398:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGC-ACCUG----UGUCAAGGUC-UUCCAACAACUCC 3' ||||| || || || || :|| |||||| ||| target 3':CCUACCACUGAACUUGAAC-GUA-UAGCAAGGUUUC-GAGA 5' |
-17.00 | 1 | RIC-seq |
| chrX:139865346:139865382:[+] | chrX:139854358:139854398:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGC-ACCUG----UGUCAAGGUC-UUCCAACAACUC-CGG 3' ||||| || || || || :|| |||||| ||| |: target 3':CCUACCACUGAACUUGAAC-GUA-UAGCAAGGUUUC-GAGAGUU 5' |
-17.40 | 6 | RIC-seq |
| chrX:139865346:139865385:[+] | chrX:139854353:139854398:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGC-ACCUG----UGUCAAGGUC-UUCCAACAA-CUCC-GGGUC 3' ||||| || || || || :|| |||||| ||| :||: target 3':CCUACCACUGAACUUGAAC-GUA-UAGCAAGGUUUCGAGAGUUUCCGC 5' |
-20.90 | 6 | RIC-seq |
| chrX:139865346:139865393:[+] | chrX:139854350:139854398:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGC-ACCUG----UGUCAAGGUC-UUCCAACAA-CUCC-GGGUCUUCCAGCG 3' ||||| || || || || :|| |||||| ||| :||: ||| target 3':CCUACCACUGAACUUGAAC-GUA-UAGCAAGGUUUCGAGAGUUUCCG------CGCC 5' |
-22.00 | 4 | RIC-seq |
| chrX:139865346:139865395:[+] | chrX:139854475:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCA-GCGAC 3' ||:::||| ||||| |:|| ||: ||:|| target 3':ACUGUUGUGCACACA---CUAGUUA-----------CCGACGUCUCCGUUGU 5' |
-22.50 | 4 | RIC-seq |
| chrX:139865346:139865396:[+] | chrX:139854476:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCA-GCGACU 3' ||:::||| ||||| |:|| ||: ||:|| target 3':ACUGUUGUGCACACA---CUAGUUA-----------CCGACGUCUCCGUUG 5' |
-23.70 | 2 | RIC-seq |
| chrX:139865346:139865398:[+] | chrX:139854345:139854398:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGC-ACCUG----UGUCAAGGUC-UUCCAACAA-CUCC-GGGUCUUCCAGC-GACUUC 3' ||||| || || || || :|| |||||| ||| :||: || ||||| target 3':CCUACCACUGAACUUGAAC-GUA-UAGCAAGGUUUCGAGAGUUUCCG------CGCCUGAAU 5' |
-25.50 | 1 | RIC-seq |
| chrX:139865350:139865398:[+] | chrX:139854386:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':GGCACCU-GUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUC 3' ||| ||: ||||: |:|| | ||||| target 3': UGUCCUCCAUCGUUCUUU------------GUCCUAC----CACUGAAC 5' |
-10.10 | 7 | RIC-seq |
| chrX:139865350:139865403:[+] | chrX:139854331:139854380:[+] | nonBSJ supported | Exon |
circRNA 5':GGCACC-UGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUC 3' ||| :|| :|||:| ||: ||| |||: ||| | :|| ||||:| target 3': CGUAUAGCAAGGUUUC-GAGAGUUUCCGC-GCCU-GAAUCCCUUUG-AGUUUAA 5' |
-21.60 | 1 | RIC-seq |
| chrX:139865350:139865404:[+] | chrX:139854373:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':GGCACCU-GUGUCAAGGUCUUCCAACAACUCCGG-GUCUUCCAGCGACUU-CAAGUCU 3' ||| ||: ||||: |||| || | ||| :|||| || :|| target 3': UGUCCUCCAUCGUUCU------UUGUCCUA-CCACUGAAC----UUGAACGUAUAGC 5' |
-12.80 | 2 | RIC-seq |
| chrX:139865350:139865410:[+] | chrX:139854366:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':GGCACCU-GUGUCAAGGUCUUCCAACAACUCCGG-GUCUUCCAGCGACUU-CAAGUC-UUCCAAU 3' ||| ||: ||||: |||| || | ||| :|||| || :|| |||||| target 3': UGUCCUCCAUCGUUCU------UUGUCCUA-CCACUGAAC----UUGAACGUAUAGCAAGGUUU 5' |
-19.60 | 1 | RIC-seq |
| chrX:139865350:139865417:[+] | chrX:139854362:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':GGCACCU-GUGUCAAGGUCUUCCAACAACUCCGG-GUCUUCCAGCGACUU-CAAGUC-UUCCAAUAAUCUCA 3' ||| ||: ||||: |||| || | ||| :|||| || :|| |||||| ||| target 3': UGUCCUCCAUCGUUCU------UUGUCCUA-CCACUGAAC----UUGAACGUAUAGCAAGGUUUC--GAG 5' |
-22.20 | 1 | RIC-seq |
| chrX:139865350:139865421:[+] | chrX:139854355:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':GGCACCU-GUGUCAAGGUCUUCCAACAACUCCGG-GUCUUCCAGCGACUU-CAAGUC-UUCCAAUAAUCUCAAGGU 3' ||| ||: ||||: |||| || | ||| :|||| || :|| |||||| ||||||:| target 3': UGUCCUCCAUCGUUCU------UUGUCCUA-CCACUGAAC----UUGAACGUAUAGCAAGGUUUCGAGAGUUUCC 5' |
-31.10 | 1 | RIC-seq |
| chrX:139865350:139865421:[+] | chrX:139854356:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':GGCACCU-GUGUCAAGGUCUUCCAACAACUCCGG-GUCUUCCAGCGACUU-CAAGUC-UUCCAAUAAUCUCAAGGU 3' ||| ||: ||||: |||| || | ||| :|||| || :|| |||||| ||||||:| target 3': UGUCCUCCAUCGUUCU------UUGUCCUA-CCACUGAAC----UUGAACGUAUAGCAAGGUUUCGAGAGUUUC 5' |
-30.70 | 2 | RIC-seq |
| chrX:139865352:139865383:[+] | chrX:139854410:139854438:[+] | nonBSJ supported | Exon |
circRNA 5':CACCU--GUGUCAAGGUCUUCCAACAACUCCGGG 3' |||: :||| ||||||| ||| || target 3': UGGGUUUACAA--CCAGAAGAGUGUCCU--CCA 5' |
-19.60 | 2 | RIC-seq |
| chrX:139865352:139865395:[+] | chrX:139854404:139854438:[+] | nonBSJ supported | Exon |
circRNA 5':CACCU--GUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGAC 3' |||: :||| ||||||| ||| :||| |||:| target 3': UGGGUUUACAA--CCAGAAGAGUGUCC---UCCA-----UCGUUC 5' |
-24.60 | 2 | RIC-seq |
| chrX:139865379:139865395:[+] | chrX:139854404:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':CCGGGUCUUCCAGCGAC 3' |:|| |||:| target 3':UGUCCUCCA--UCGUUC 5' |
-8.30 | 16 | RIC-seq |
| chrX:139865415:139865446:[+] | chrX:139854378:139854408:[+] | nonBSJ supported | Exon |
circRNA 5':UCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAG 3' ||||: | |||:||| || target 3':CGUUCUUUGUCCUACCACUGAACUUGAACGU 5' |
-10.60 | 2 | RIC-seq |
| chrX:139865876:139865908:[+] | chrX:139854395:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':CCAGGUCUUCCAGUCAAUCCACAUCUUCCGGAA 3' |||| || ||| ||| ||| target 3':UGUCCUCCA--UC-GUUCUUUGU------CCUA 5' |
-7.30 | 2 | RIC-seq |
| chrX:139866624:139866701:[+] | chrX:139846769:139846820:[+] | nonBSJ supported | Exon |
circRNA 5': CUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU--UCCA 3' |:||| |||| ||| :||||||| |||||| ||| ||||:|| ||| target 3':CGGAGGGG--AGAGACCCCUCC---------UGAGCAGA-------------GCAGAAA--CGUC---ACACGGAUGAGGC 5' |
-42.00 | 1 | RIC-seq |
| chrX:139866143:139866161:[+] | chrX:139794746:139794763:[+] | nonBSJ supported | Intron |
circRNA 5':AGACU-AUCCAUGUCUUCCA 3' |||| |:|| |: ||| target 3':CCUGAGUGGGAUCG--AGGA 5' |
-12.20 | 2 | RIC-seq |
| chrX:139866454:139866504:[+] | chrX:139823506:139823553:[+] | nonBSJ supported | Intron |
circRNA 5':AGGUACGUCUUCCAAC---AAAGGUAUGUCUUCCAACAAA-GGUACGUCUUCCAG 3' || || |||| |||||:||| |||| :|||| ||| target 3':ACC-UG-AGAACUUUAAAAUUUCCGUACUAAAGGACCGAGAUCAUG-----GGUG 5' |
-24.10 | 2 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chrX:139865876:139865908:[+] | circRNA | - | chrX:139865903-139865904 | C>T | LINC-JP | ICGC |