5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866279:139866285:[+] | chrX:139796365:139796371:[+] | nonBSJ supported | 3UTR |
circRNA 5':UGUCUUC 3' ||||| target 3':UCAGAAA 5' |
-4.90 | 1 | RIC-seq |
| chrX:139866279:139866303:[+] | chrX:139796365:139796390:[+] | nonBSJ supported | 3UTR |
circRNA 5':UGUCU-UCCAGAAAAUCCUUGUCUUC 3' |||| || ||||| target 3':UCAGACAGACAACACCCUCUCAGAAA 5' |
-8.20 | 1 | RIC-seq |
| chrX:139865606:139865634:[+] | chrX:139793785:139793813:[+] | nonBSJ supported | CDS |
circRNA 5': CAGGAAAUCCAUGUCUUCCAAUAAUUUCA 3' |||||| ||||||||| | ||| ||:| target 3':GGUCCUUAAGGUACAGAUGCUUAAAAAGG 5' |
-26.00 | 1 | RIC-seq |
| chrX:139865339:139865354:[+] | chrX:139854477:139854491:[+] | nonBSJ supported | Exon |
circRNA 5':GGGUUUCCGAUGGCAC 3' ||:| | || |||| target 3':ACCGACGUCU-CCGUU 5' |
-11.70 | 1 | RIC-seq |
| chrX:139865346:139865360:[+] | chrX:139854499:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACCUGUGU 3' ||:::||| |||| target 3':ACUGUUGUGCACAC 5' |
-14.00 | 11 | RIC-seq |
| chrX:139865346:139865365:[+] | chrX:139854488:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACC--UGUG-UCAA-GG 3' ||:::||| |||| |||| || target 3':ACUGUUGUGCACACACUAGUUACCG 5' |
-17.20 | 1 | RIC-seq |
| chrX:139865346:139865367:[+] | chrX:139854487:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACC--UGUG-UCAA-GGUC 3' ||:::||| |||| |||| ||: target 3':ACUGUUGUGCACACACUAGUUACCGA 5' |
-19.70 | 11 | RIC-seq |
| chrX:139865346:139865377:[+] | chrX:139854473:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACC--UGUG-UCAA-GGUCUUC----CAACAAC 3' ||:::||| |||| |||| ||: |||||| target 3':ACUGUUGUGCACACACUAGUUACCGACGUCUCCGUUGUUA 5' |
-22.00 | 1 | RIC-seq |
| chrX:139865346:139865384:[+] | chrX:139854467:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACC--UGUG-UCAA-GGUCUUC----CAACAACUCCGGGU 3' ||:::||| |||| |||| ||: |||||| |::| target 3':ACUGUUGUGCACACACUAGUUACCGACGUCUCCGUUGUUAUUGUUC 5' |
-23.80 | 10 | RIC-seq |
| chrX:139865346:139865395:[+] | chrX:139854455:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACC--UGUG-UCAA-GGUCUUC----CAACAACUCCGGGUCUUCCAGCGAC 3' ||:::||| |||| |||| ||: |||||| |::|: |:|:| target 3':ACUGUUGUGCACACACUAGUUACCGACGUCUCCGUUGUUAUUGUUCGUCUUCUUGUUC 5' |
-27.80 | 12 | RIC-seq |
| chrX:139865346:139865403:[+] | chrX:139854465:139854512:[+] | nonBSJ supported | Exon |
circRNA 5':CGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCA-GCGACUU---CAAGUC 3' ||:::||| ||||| |:|| ||: ||:|| ||||: target 3':ACUGUUGUGCACACA---CUAGUUA-----------CCGACGUCUCCGUUGUUAUUGUUCGU 5' |
-27.40 | 5 | RIC-seq |
| chrX:139865350:139865398:[+] | chrX:139854386:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':GGCACCU-GUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUC 3' ||| ||: ||||: |:|| | ||||| target 3': UGUCCUCCAUCGUUCUUU------------GUCCUAC----CACUGAAC 5' |
-10.10 | 10 | RIC-seq |
| chrX:139865379:139865395:[+] | chrX:139854404:139854418:[+] | nonBSJ supported | Exon |
circRNA 5':CCGGGUCUUCCAGCGAC 3' |:|| |||:| target 3':UGUCCUCCA--UCGUUC 5' |
-8.30 | 8 | RIC-seq |
| chrX:139865552:139865569:[+] | chrX:139854287:139854302:[+] | nonBSJ supported | Exon |
circRNA 5':AGCAAUUACUGGUCUUCC 3' || ||: ||| :|| target 3': CGCUAGC-ACCUUGAGU 5' |
-4.80 | 15 | RIC-seq |
| chrX:139866305:139866343:[+] | chrX:139854520:139854563:[+] | nonBSJ supported | Exon |
circRNA 5':CUCAAAUCCAUAGCUUC-CGAA--AAAUCC--AGGUCUUCCAGG 3' |||||| ||| |:| |||| |||: |||| target 3':UGGUUUACUAUUUUAAGUGUUCUGUUUAUUUUUCCGAUUGGUCA 5' |
-13.40 | 36 | RIC-seq |
| chrX:139866329:139866345:[+] | chrX:139854540:139854563:[+] | nonBSJ supported | Exon |
circRNA 5':UCCAGGUC------UUC-CAGGAA 3' |||::| ||| ||:|| target 3':UGGUUUACUAUUUUAAGUGUUCUG 5' |
-8.10 | 1 | RIC-seq |
| chrX:139866655:139866701:[+] | chrX:139854676:139854734:[+] | nonBSJ supported | Exon |
circRNA 5':CUCGUCUUCCAACAU-------------CUCC--ACGUCUUCCAGCAUCUCUGUGUCUUCCA 3' ||| || ||||| ||| || ||||| ||||||||:| |:|| target 3':AAGC-GAUAAUUGUAUUUGAAAGAACGGGAGAAAUG-AGAAGAACGUAGAGAUAGU-AGGGA 5' |
-31.70 | 29 | RIC-seq |
| chrX:139866656:139866701:[+] | chrX:139854676:139854734:[+] | nonBSJ supported | Exon |
circRNA 5': UCGUCUUCCAACAU-------------CUCC--ACGUCUUCCAGCAUCUCUGUGUCUUCCA 3' ||| || ||||| ||| || ||||| ||||||||:| |:|| target 3':AAGC-GAUAAUUGUAUUUGAAAGAACGGGAGAAAUG-AGAAGAACGUAGAGAUAGU-AGGGA 5' |
-31.50 | 2 | RIC-seq |
| chrX:139866674:139866693:[+] | chrX:139816062:139816087:[+] | nonBSJ supported | Exon |
circRNA 5':ACGUCUUCCA------GCAUCUCUGU 3' | |||||| ||| |||||: target 3':GGGAGAAGGGUAAGAACGU-GAGACGA 5' |
-19.60 | 14 | RIC-seq |
| chrX:139866678:139866719:[+] | chrX:139816041:139816077:[+] | nonBSJ supported | Exon |
circRNA 5':CUUCCAGCAUCUCUGUGUCUUCCAGCAUCUU-CAUGUCUUCCA 3' ||| ||| |||||: |||: ||||| ||| ||:||| target 3':UAAGAACGU-GAGACG-AGAGU----UAGAAGGUAGAGGAGGA 5' |
-31.60 | 1 | RIC-seq |
| chrX:139866727:139866766:[+] | chrX:139816041:139816079:[+] | nonBSJ supported | Exon |
circRNA 5':CCCAGUCUUCCAUCAACUGG-CUCAAUA-UCCAUGUCUUCCA 3' ||| |||| ||: ||| |||||| ||||| ||:||| target 3': GGUAAGAACGUGA--GACGAGAGUUAGAAGGUAGAGGAGGA 5' |
-35.40 | 9 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chrX:139854287:139854302:[+] | target | - | chrX:139854296-139854297 | C>T | PRAD-CA | ICGC |
| chrX:139866305:139866343:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |