Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865651:139865680:[+] chrX:153671276:153671306:[+] nonBSJ supported 3UTR

circRNA 5':ACAGAUCUU-CCAGCUAAUCCAUGUCUUCCA 3'


            |||| |: || ||||:|||||||


target  3':CGUCUUCAGUGGAAAAGGAGGUGCAGAAGGG 5'

 -27.30 22 RIC-seq
chrX:139866753:139866779:[+] chrX:153671266:153671289:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAUGUCUUCCAACGUCUCCAGUGU 3'


            ||||:||||||| ||| |:


target  3':GAGGUGCAGAAGGGUUU----GUCUCGU 5'

 -22.30 15 RIC-seq
chrX:139865684:139865737:[+] chrX:153667131:153667188:[+] nonBSJ supported CDS

circRNA 5':AAAUCUGUGUC----UUCCACCAAAUCCAAGUCUU---CCAGUAAAUCUA---GUUCUUCCAGA 3'


            |||| | ||| ||||| || |:||: ||| || |::|:|||||


target  3': UUAGUC-CAGUUGUAAGGUCAG--AGC--CGGAGCCGGGUAGCUGAGUCCCCCGGGGAGGUCG 5'

 -29.30 16 RIC-seq
chrX:139865686:139865716:[+] chrX:153667133:153667170:[+] nonBSJ supported CDS

circRNA 5':AUCUGUGUCUUCCACCAAA---UCCAAG---UCUUCC 3'


            ||| |:||: ||| || :|:|||


target  3':CAGAGCCGGAGCCGGGUAGCUGAGUCCCCCGGGGAGGU 5'

 -15.00 3 RIC-seq
chrX:139865686:139865717:[+] chrX:153667132:153667170:[+] nonBSJ supported CDS

circRNA 5':AUCUGUGUCUUCCACCAAA---UCCAAG---UCUUCCA 3'


            ||| |:||: ||| || :|:||||


target  3':CAGAGCCGGAGCCGGGUAGCUGAGUCCCCCGGGGAGGUC 5'

 -16.70 13 RIC-seq
chrX:139866118:139866170:[+] chrX:153670545:153670604:[+] nonBSJ supported CDS

circRNA 5':UCUUC----CAAUGGCCUCCAGGUCUUCCAGA-CUA--UCCAUGUCUUC--CAGAAAAUCCU 3'


            |||| |||||| |||||: :|||||| |: ||||: ||:| ||| |||


target  3':UGAAGACCAGUUACCCGAGGUUGUCGAGGUCUCGGCCGAGGUGGAGGAAAAGUCCC--AGGC 5'

 -44.60 26 RIC-seq
chrX:139866118:139866170:[+] chrX:153670546:153670604:[+] nonBSJ supported CDS

circRNA 5':UCUUC----CAAUGGCCUCCAGGUCUUCCAGA-CUA--UCCAUGUCUUC--CAGAAAAUCCU 3'


            |||| |||||| |||||: :|||||| |: ||||: ||:| ||| |||


target  3':UGAAGACCAGUUACCCGAGGUUGUCGAGGUCUCGGCCGAGGUGGAGGAAAAGUCCC--AGG 5'

 -44.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:153667131:153667188:[+] target 11627 chrX:153667165-153667166 C>T Intellectual_disability,_X-linked_41 ClinVar
chrX:153667132:153667170:[+] target 11627 chrX:153667165-153667166 C>T Intellectual_disability,_X-linked_41 ClinVar
chrX:153667133:153667170:[+] target 11627 chrX:153667165-153667166 C>T Intellectual_disability,_X-linked_41 ClinVar
chrX:153670545:153670604:[+] target 3237495 chrX:153670554-153670555 A>AT Intellectual_disability,_X-linked_41 ClinVar
chrX:153670546:153670604:[+] target 3237495 chrX:153670554-153670555 A>AT Intellectual_disability,_X-linked_41 ClinVar
chrX:153667131:153667188:[+] target - chrX:153667176-153667177 T>C LAML-KR ICGC