Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865389:139865404:[+] chr7:148684290:148684309:[-] nonBSJ supported Exon

circRNA 5':CAGC-GACUUCA---AGUCU 3'


            |:| |||| |:||


target  3':AUUGACUGACACUUGUUAGU 5'

 -5.60 14 RIC-seq
chrX:139866051:139866081:[+] chr7:148684270:148684305:[-] nonBSJ supported Exon

circRNA 5':CGGAUAAU---UUGGGUCUUC--CUGAAAAUCUACG 3'


            |:|:|| || |:||| |||| ||


target  3':UCUUGUUCCUCAAGCUAGACAUUGACUGACACUUGU 5'

 -11.60 24 RIC-seq
chrX:139866215:139866275:[+] chr7:148684260:148684337:[-] nonBSJ supported Exon

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAAGUCCA-CG-UCUUCC----------AACAA-----------AGC-CAUG-UCUUCCAGACUAU 3'


            ||||| ||: |:|||| || ||| ||||| |:| ||: :|||| |||:|


target  3':CCCUUUCU-CAUC-----UUGUUCCUCAAGCUAGACAUUGACUGACACUUGUUAGUUAACUCUAUUGAGUGAUGGAAGC-CUGGU 5'

 -16.90 1 RIC-seq
chrX:139866215:139866275:[+] chr7:148684260:148684338:[-] nonBSJ supported Exon

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAAGUCCA-CG-UCUUCC----------AACAA-----------AGC-CAUG-UCUUCCAGACUAU 3'


            ||||| ||: |:|||| || ||| ||||| |:| ||: :|||| |||:|


target  3':CCCUUUCU-CAUC-----UUGUUCCUCAAGCUAGACAUUGACUGACACUUGUUAGUUAACUCUAUUGAGUGAUGGAAGC-CUGGUC 5'

 -17.10 20 RIC-seq
chrX:139866216:139866261:[+] chr7:148684276:148684341:[-] nonBSJ supported Exon

circRNA 5': GGAAAUCCG--------UGUCUUCCAGCAAGU-----------C-CACG-UCUUCCAACAAAGCCAU 3'


            ||| || || || |:||| | ||| :|||| || |||||


target  3':UCCUCAAGCUAGACAUUGACUGACACUUGUUAGUUAACUCUAUUGAGUGAUGGAAGCCUGG-UCGGU 5'

 -18.00 25 RIC-seq
chrX:139866216:139866261:[+] chr7:148684276:148684342:[-] nonBSJ supported Exon

circRNA 5': GGAAAUCCG--------UGUCUUCCAGCAAGU-----------C-CACG-UCUUCCAACAAAGCCAU 3'


            ||| || || || |:||| | ||| :|||| || |||||


target  3':UCCUCAAGCUAGACAUUGACUGACACUUGUUAGUUAACUCUAUUGAGUGAUGGAAGCCUGG-UCGGUU 5'

 -18.20 1 RIC-seq
chrX:139866224:139866261:[+] chr7:148684293:148684341:[-] nonBSJ supported Exon

circRNA 5':GUGUCUUCCAGCAAGU-----------C-CACG-UCUUCCAACAAAGCCAU 3'


            || || |:||| | ||| :|||| || |||||


target  3':GACUGACACUUGUUAGUUAACUCUAUUGAGUGAUGGAAGCCUGG-UCGGU 5'

 -17.00 1 RIC-seq
chrX:139866332:139866343:[+] chr7:148684235:148684248:[-] nonBSJ supported Exon

circRNA 5':AGGUCUUC--CAGG 3'


            |||| |||


target  3':AUCAGUUCACGUCA 5'

 -6.00 2 RIC-seq
chrX:139866433:139866470:[+] chr7:148684262:148684294:[-] nonBSJ supported Exon

circRNA 5':CAAAG-GUACGUCUUCCAACAAA-GGUACG-UCUUCCAACA 3'


            |||| ||| | ||||| :|| || ||| |||


target  3':CUUUCUCAU-C------UUGUUCCUCAAGCUAGACA-UUGA 5'

 -7.70 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:148684235:148684248:[-] target - chr7:148684245-148684246 C>T LAML-KR ICGC