Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866341:139866373:[+] chr3:108373079:108373117:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCA--GCA-AAUCC------ACGUCU 3'


            |||| ||||||||| ||| ||||| ||:||


target  3':AUCUUGA---ACAGAAGGUAACGUCUUAGGAGAACUUGUAGU 5'

 -26.30 5 RIC-seq
chrX:139866341:139866381:[+] chr3:108373081:108373117:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCA--GCA-AAUCCACGUCUUCCAACAA 3'


            |||| ||||||||| ||| ||||| |||| ||||


target  3':AUCUUGA---ACAGAAGGUAACGUCUUAGG---AGAAC-UUGUA 5'

 -26.10 1 RIC-seq
chrX:139866341:139866384:[+] chr3:108373077:108373116:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCA--GCA-AAUCCACGUCUUCCAACAAAGC 3'


            |||| ||||||||| ||| ||||| |||| |||| :|


target  3': UCUUGA---ACAGAAGGUAACGUCUUAGG---AGAAC-UUGUAGUGA 5'

 -26.40 1 RIC-seq
chrX:139866341:139866384:[+] chr3:108373077:108373117:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCA--GCA-AAUCCACGUCUUCCAACAAAGC 3'


            |||| ||||||||| ||| ||||| |||| |||| :|


target  3':AUCUUGA---ACAGAAGGUAACGUCUUAGG---AGAAC-UUGUAGUGA 5'

 -27.10 45 RIC-seq
chrX:139865560:139865587:[+] chr3:108367342:108367369:[+] nonBSJ supported Intron

circRNA 5':CUGGUC-UUCCACCAAAUCCAGAUCUUCC 3'


            ||| ||||| || |||


target  3':UGCCUCUAAGGUAAGACCUG-CUUAAAGU 5'

 -8.20 23 RIC-seq