Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865994:139866018:[+] chrX:102003993:102004019:[+] nonBSJ supported CDS

circRNA 5':UCCAGUAACCUCCCAGUCU--UCCAGA 3'


            |||||| |||||| ||| |||||


target  3':UGGUCAUCGGAGGGAGAGACGAGGUCG 5'

 -32.50 9 RIC-seq
chrX:139865994:139866053:[+] chrX:102003951:102004019:[+] nonBSJ supported CDS

circRNA 5':UCCAGUAACCUCCCAGUCU--UCCAGAAAAUC---------CACGUCUUCCCAACAAUCCAAGUCUUCCGG 3'


            |||||| |||||| ||| ||||| || |:||| |:|| ||


target  3':UGGUCAUCGGAGGGAGAGACGAGGUCGAAAUCGAACAUAUCGU-CGGAAAAAAAGUCAAAACCGGAC--CCG 5'

 -35.50 1 RIC-seq
chrX:139865994:139866054:[+] chrX:102003952:102004019:[+] nonBSJ supported CDS

circRNA 5':UCCAGUAACCUCCCAGUCU--UCCAGAAAAUC---------CACGUCUUCCCAACAAUCCAAGUCUUCCGGA 3'


            |||||| |||||| ||| ||||| || |:||| |:|| ||


target  3':UGGUCAUCGGAGGGAGAGACGAGGUCGAAAUCGAACAUAUCGU-CGGAAAAAAAGUCAAAACCGGAC--CC 5'

 -36.40 8 RIC-seq