Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866292:139866324:[+] chr7:86468509:86468560:[+] nonBSJ supported CDS

circRNA 5':AUCCU--UGUCUUCCCUCAAAUC-----------------CAUAGCUUCCGA 3'


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target  3':CGGGUCCGCAGAAGGGUGGACUACAUCAGGAGUCCUUCCAGUAUCGUAGGUC 5'

 -26.90 18 RIC-seq
chrX:139866312:139866324:[+] chr7:86468509:86468521:[+] nonBSJ supported CDS

circRNA 5':CCAUAGCUUCCGA 3'


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target  3':AGUAUCGUAGGUC 5'

 -14.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866292:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866312:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC