Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866215:139866236:[+] chr1:42645455:42645475:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUC--CGUGU-CUUCCAGCA 3'


            |||| |:||| || ||


target  3':CCCUUCCGUAGUACACGA----CGA 5'

 -7.90 1 RIC-seq
chrX:139866222:139866247:[+] chr1:42645439:42645466:[-] nonBSJ supported CDS

circRNA 5':CCGUGUCUUCCA-GCAAGUCCA--CGUCU 3'


            ||::||| || |:||


target  3': GCGUAGACCUUCCGAACCCUUCCGUAGU 5'

 -8.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:42645439:42645466:[-] target - chr1:42645440-42645441 G>A PACA-CA ICGC