Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865635:139865678:[+] chr1:11269408:11269448:[-] nonBSJ supported CDS

circRNA 5':AGGUCU----UCCAUCAAAUACAGAUCUUCCAGCUAAUCCAUGUCUUC 3'


            ||||: ||||: ||: | |||:||| ||| :|:|


target  3':CCCAGGACAAAGGUGACC-------AGGUGAUCGGUUACGUAGGGGAA 5'

 -24.60 21 RIC-seq
chrX:139865657:139865698:[+] chr1:11269416:11269447:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCC 3'


            ||||| || ||||: |||: ||::||::|


target  3':AAAGGU-GACCAGGUGAUC--GGUU-------ACGUAGGGGA 5'

 -22.70 1 RIC-seq
chrX:139865657:139865698:[+] chr1:11269417:11269447:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCC 3'


            ||||| || ||||: |||: ||::||::|


target  3': AAGGU-GACCAGGUGAUC--GGUU-------ACGUAGGGGA 5'

 -21.80 3 RIC-seq
chrX:139865658:139865698:[+] chr1:11269418:11269447:[-] nonBSJ supported CDS

circRNA 5':UUCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCC 3'


            |||| || ||||: |||: ||::||::|


target  3': AGGU-GACCAGGUGAUC--GGUU-------ACGUAGGGGA 5'

 -21.00 1 RIC-seq
chrX:139865659:139865698:[+] chr1:11269419:11269447:[-] nonBSJ supported CDS

circRNA 5':UCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCC 3'


            ||| || ||||: |||: ||::||::|


target  3': GGU-GACCAGGUGAUC--GGUU-------ACGUAGGGGA 5'

 -19.00 12 RIC-seq
chrX:139865667:139865717:[+] chr1:11269410:11269446:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAA-GUCUUCCA 3'


            ||| ||| ||||| ||| | ||||| |||| |: |:||


target  3':CAGG-ACA-AAGGU-------GAC-C---AGGUGAUC--GGUUACGUAGGGG 5'

 -24.20 1 RIC-seq