Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865753:139865792:[+] chr1:183938457:183938501:[-] nonBSJ supported CDS

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAA-----UCC-AGGUCUUCC 3'


            |||| ||| |||||| | ||| |||:||:|


target  3': UCAGGACCACACCCCCCAUCUUUCAGUCGAACAGGCUCCGGAGGA 5'

 -23.20 17 RIC-seq
chrX:139865754:139865792:[+] chr1:183938458:183938501:[-] nonBSJ supported CDS

circRNA 5':AGUCAAUCAGUGUCUUCCAGAAAGAAA-----UCC-AGGUCUUCC 3'


            ||| ||| |||||| | ||| |||:||:|


target  3': CAGGACCACACCCCCCAUCUUUCAGUCGAACAGGCUCCGGAGGA 5'

 -21.50 1 RIC-seq
chrX:139865672:139865702:[+] chr1:183907662:183907687:[-] nonBSJ supported Intron

circRNA 5':UGUCUUCCAGAAAAAUCUGUGUCUUCCACCA 3'


            || |||||:|||| : |||||| || |


target  3':UCA-AAGGUUUUUU---GGACAGAAAGUCG 5'

 -17.30 1 RIC-seq
chrX:139865709:139865757:[+] chr1:183907653:183907687:[-] nonBSJ supported Intron

circRNA 5':AGUCUUC-CAGUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUC 3'


            ||||| |||| |||||: ||||:|| | |||| |||:


target  3':AUAGAAUUGUCA-----------AAGGUU-UUUUGGA-C-AGAAAGUCG 5'

 -22.30 21 RIC-seq