Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866462:139866480:[+] chr17:47389362:47389382:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAG--GUAUGUC 3'


            ||||| |:||||


target  3':AAAGGUGUCCAAAGCGUACAU 5'

 -11.00 2 RIC-seq
chrX:139866462:139866494:[+] chr17:47389362:47389388:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAG--GUAUGUCUUCCAACAAA-GGUA 3'


            ||||| |:|||| ||| ||:


target  3':AAAGGUGUCCAAAGCGUACA--------UUUACCG 5'

 -11.40 4 RIC-seq
chrX:139866462:139866495:[+] chr17:47389362:47389389:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAG--GUAUGUCUUCCAACAAA-GGUAC 3'


            ||||| |:|||| ||| ||:|


target  3':AAAGGUGUCCAAAGCGUACA--------UUUACCGU 5'

 -12.20 33 RIC-seq