Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865878:139865905:[+] chr15:31197562:31197584:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAAUCCACAUCUUCCG 3'


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target  3':GCC-GAAGGUAAUAAAAU----GAAGGA 5'

 -16.30 1 RIC-seq
chrX:139865892:139865925:[+] chr15:31197575:31197615:[+] nonBSJ supported CDS

circRNA 5':AUC-CACAUCUUCCGGAAAAAAUCCAGGU------CUUCCA 3'


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target  3':AAGAGUGUA-AGGGCCCAUCGGAAAACCGAAAGCCGAAGGUA 5'

 -22.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:31197562:31197584:[+] target 3576978 chr15:31197569-31197570 AAAAT>A Karyomegalic_interstitial_nephritis|not_provided ClinVar
chrX:139865878:139865905:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865892:139865925:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC