Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865761:139865793:[+] chr3:131103207:131103234:[+] nonBSJ supported 3UTR

circRNA 5': CAGU--GUCUUCCAGAAAGAAAUCCAGGUCUUCCA 3'


            |||: |:|||||| || | :|||||


target  3':UGUCGGACGGAAGGUAU-------GG-CGGGAAGGA 5'

 -25.00 1 RIC-seq
chrX:139865800:139865832:[+] chr3:131103207:131103234:[+] nonBSJ supported 3UTR

circRNA 5': CAGU--GUCUUCCAGAAAGAAAUCCAGGUCUUCCA 3'


            |||: |:|||||| || | :|||||


target  3':UGUCGGACGGAAGGUAU-------GG-CGGGAAGGA 5'

 -25.00 1 RIC-seq
chrX:139865821:139865869:[+] chr3:131103207:131103247:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCCAGU-CAGUCAGUGUCUUCCAGAAAAAUCUACG-UCUUCCA 3'


            || || ||||| |||:| ||:|||||| || :|||||


target  3':AGUG-AGUUGGUCAUGUCGG--ACGGAAGGUAUG-------GCGGGAAGGA 5'

 -38.30 2 RIC-seq
chrX:139866060:139866102:[+] chr3:131106649:131106688:[+] nonBSJ supported 3UTR

circRNA 5':UGGGUCUU---CCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUCU 3'


            ||||| |||| ||| | :||||| :|| |:|


target  3':CCCCAGUAAGUGGACA---AGA-G-GGAAGGAACAAAUGGACCGG 5'

 -26.10 1 RIC-seq
chrX:139866060:139866106:[+] chr3:131106644:131106688:[+] nonBSJ supported 3UTR

circRNA 5':UGGGUCUU---CCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUC-UUCCA 3'


            ||||| |||| ||| | :||||| :|| |:| ||||


target  3':CCCCAGUAAGUGGACA---AGA-G-GGAAGGAACAAAUGGACCGGAAAGG 5'

 -31.50 23 RIC-seq
chrX:139866060:139866106:[+] chr3:131106645:131106688:[+] nonBSJ supported 3UTR

circRNA 5':UGGGUCUU---CCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUCUUCCA 3'


            ||||| |||| ||| | :||||| :|| |:||| |


target  3':CCCCAGUAAGUGGACA---AGA-G-GGAAGGAACAAAUGGACCGGAAAG 5'

 -28.40 5 RIC-seq
chrX:139866293:139866360:[+] chr3:131102532:131102585:[+] nonBSJ supported 3UTR

circRNA 5':UCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUU---CCAG 3'


            ||||| |||| ||| ||| ||| |||| ||||| ||| | |||


target  3': GGAAC-GAAGUCU---------UCG-AGGAACGUUA-GUCCCU--GGUCCCAUCA-CACUGUUUACGGU 5'

 -32.30 1 RIC-seq
chrX:139866293:139866360:[+] chr3:131102532:131102586:[+] nonBSJ supported 3UTR

circRNA 5':UCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUU---CCAG 3'


            ||||| |||| ||| ||| ||| |||| ||||| ||| | |||


target  3':GGGAAC-GAAGUCU---------UCG-AGGAACGUUA-GUCCCU--GGUCCCAUCA-CACUGUUUACGGU 5'

 -33.70 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866293:139866360:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC