Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865435:139865462:[+] chr8:143692539:143692568:[-] nonBSJ supported 3UTR

circRNA 5':CUGAGC-UUCCAGAAAAUCCACAUCUUCC 3'


            |||| |||||| |||| :|||


target  3':UACUCCAAAGGUCCCAGAAGUGUCCGAGGU 5'

 -17.70 4 RIC-seq
chrX:139865478:139865529:[+] chr8:143692476:143692516:[-] nonBSJ supported 3UTR

circRNA 5':UCC-GGACAAUCCAUGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCAAGU 3'


            || |||| ||| ||| || |||| || ||||


target  3':CGGACCUGGCU-GUAAA--------UUCC-GGACCAGACA--CACCCCGUUCC 5'

 -13.20 5 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:143692476:143692516:[-] target - chr8:143692480-143692481 G>T LICA-CN ICGC