Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866770:139866793:[+] chr19:53057755:53057779:[+] nonBSJ supported CDS

circRNA 5': UCUCC--AGUGUGCUGAUCUUCUGAC 3'


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target  3':AAGAGAUCUCACACUUC-AGAU-GCUA 5'

 -14.30 1 RIC-seq
chrX:139866773:139866804:[+] chr19:53057824:53057857:[+] nonBSJ supported CDS

circRNA 5':CCAGUGUGCUGAUCUUC--UG-ACAUUCAGGUCUU 3'


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target  3':CGUCACACUUA-AGAUCAUACAUGUCGGUCCUGAC 5'

 -21.40 16 RIC-seq
chrX:139866776:139866804:[+] chr19:53057824:53057855:[+] nonBSJ supported CDS

circRNA 5': GUGUGCUGAUCUUC--UG-ACAUUCAGGUCUU 3'


            ||||| ||| || ||| :|||| ||


target  3':UCACACUUA-AGAUCAUACAUGUCGGUCCUGAC 5'

 -17.70 17 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866770:139866793:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866773:139866804:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866776:139866804:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC