Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866221:139866287:[+]	chr10:103577989:103578059:[-]	nonBSJ supported	5UTR	circRNA 5':UCCGU-GUCUUCCAGC---AAGUCCACGUCUUCCAACAAAGCCAU-GUCUUCCA-GA--CUAU--CCAUGUC-UUCCA 3' \|\|\|: \|:\|\|: \|\| \|\|\|: \|: \|\|\| \|\|\|\|\| \|: \|\| \|\| \|\| \| \|\| \|\|\|\| target 3':CGGCGUCGGAGC--CGAAAUUCGACCCCGC--GGUC--UUCGGAUUCGCCUCUCGCUCCGACACUGG-AGAGCAAGGG 5'	-25.70	1	RIC-seq
chrX:139865843:139865891:[+]	chr10:103558986:103559027:[-]	nonBSJ supported	CDS	circRNA 5':GUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCA--GG-UCUUCCAGUCA 3' \|\|\|\|\| \|\|: \|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\| :\|\| target 3':AAGAAGAACAAAA-------AGGUGGUGGUACAGGUACCCAAGAAG--UAG 5'	-28.30	2	RIC-seq
chrX:139865913:139865941:[+]	chr10:103572785:103572814:[-]	nonBSJ supported	CDS	circRNA 5':UCCAGG-UCUUCCAGCCAAUAUAUGUCUUC 3' \|\|\|\| \|\|:\|\|\|\| \|\|\|\|:\|\| \|\|\|: target 3':UGGUCGAAGGAGGUGACUUAUGUAGAGAGC 5'	-26.10	1	RIC-seq
chrX:139865920:139865952:[+]	chr10:103573334:103573365:[-]	nonBSJ supported	CDS	circRNA 5':CUUCCA--GCCAAUAUAUGUCUUCCUGAAGAUCCA 3' \|\|\|\|\| :\|\| \|\|\|\|\|\|\| \|\|:\|\|\|\| target 3':CAAGGUAUUGGGUUC---CAGAAGGUAUUUUAGGA 5'	-27.40	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr10:103573334:103573365:[-]	target	-	chr10:103573338-103573339	C>A	LICA-CN	ICGC