Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865952:139865999:[+] chr19:57325461:57325514:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAGAAAAUCCAU--GUCU-UCCAGAAAA---UCCAUGUCU-UCCAGU 3'


            |:|| :||| |:|| |||| |||| |:|| ||||:|


target  3':CGUAG-GGGUAAACCGACGAGCCGGAGAGGUAAACCGACAGGU-CGGAGAGGUUAC 5'

 -28.00 1 RIC-seq
chrX:139865952:139866000:[+] chr19:57325461:57325514:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAGAAAAUCCAU--GUCU-UCCAGAAAA---UCCAUGUCU-UCCAGUA 3'


            |:|| :||| |:|| |||| |||| |:|| ||||:|


target  3':CGUAG-GGGUAAACCGACGAGCCGGAGAGGUAAACCGACAGGU-CGGAGAGGUUAC 5'

 -28.50 41 RIC-seq
chrX:139865952:139866000:[+] chr19:57325462:57325514:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAGAAAAUCCAU--GUCU-UCCAGAAAA---UCCAUGUCU-UCCAGUA 3'


            |:|| :||| |:|| |||| |||| |:|| ||||:|


target  3': GUAG-GGGUAAACCGACGAGCCGGAGAGGUAAACCGACAGGU-CGGAGAGGUUAC 5'

 -27.90 1 RIC-seq
chrX:139865953:139866000:[+] chr19:57325463:57325514:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAGAAAAUCCAU--GUCU-UCCAGAAAA---UCCAUGUCU-UCCAGUA 3'


            ||| :||| |:|| |||| |||| |:|| ||||:|


target  3': UAG-GGGUAAACCGACGAGCCGGAGAGGUAAACCGACAGGU-CGGAGAGGUUAC 5'

 -25.80 1 RIC-seq
chrX:139865957:139866000:[+] chr19:57325465:57325514:[-] nonBSJ supported CDS

circRNA 5':UUCCAGAAAAUCCAU--GUCU-UCCAGAAAA---UCCAUGUCU-UCCAGUA 3'


            |||| |:|| |||| |||| |:|| ||||:|


target  3':GGGGUAAACCGACGAGCCGGAGAGGUAAACCGACAGGU-CGGAGAGGUUAC 5'

 -24.40 1 RIC-seq
chrX:139865971:139866000:[+] chr19:57325481:57325514:[-] nonBSJ supported CDS

circRNA 5':UGUCU-UCCAGAAAA---UCCAUGUCU-UCCAGUA 3'


            |:|| |||| |||| |:|| ||||:|


target  3':CCGGAGAGGUAAACCGACAGGU-CGGAGAGGUUAC 5'

 -22.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:57325461:57325514:[-] target - chr19:57325481-57325482 G>A BTCA-JP ICGC
chr19:57325461:57325514:[-] target - chr19:57325495-57325496 G>T LINC-JP ICGC
chr19:57325462:57325514:[-] target - chr19:57325481-57325482 G>A BTCA-JP ICGC
chr19:57325462:57325514:[-] target - chr19:57325495-57325496 G>T LINC-JP ICGC
chr19:57325463:57325514:[-] target - chr19:57325481-57325482 G>A BTCA-JP ICGC
chr19:57325463:57325514:[-] target - chr19:57325495-57325496 G>T LINC-JP ICGC
chr19:57325465:57325514:[-] target - chr19:57325481-57325482 G>A BTCA-JP ICGC
chr19:57325465:57325514:[-] target - chr19:57325495-57325496 G>T LINC-JP ICGC
chr19:57325481:57325514:[-] target - chr19:57325495-57325496 G>T LINC-JP ICGC