Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865876:139865929:[+]	chr17:61892994:61893025:[+]	nonBSJ supported	CDS	circRNA 5':CCAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUC-UUCC----AGCCA 3' \|\|\|: :\|\|\|\| \|\|\|\|\|:\| :\|\|\| \|\|\|\| target 3': GUCUC--GGGUCC------------------------GGUCCGGCGAGGGACAUCGGA 5'	-26.30	2	RIC-seq
chrX:139866458:139866492:[+]	chr17:61890736:61890771:[+]	nonBSJ supported	CDS	circRNA 5':ACGUCUUCCAACAAA-GGUAU--GUCUUCCAACAAAGG 3' \| :\|\|\|\|\|\|\| \|\| \|\|\| \|\|\| \|\|\|\|: target 3':CGAGGAAGGUUCAAGGCCUGGUCCAGU-GGUCGUUUU 5'	-20.20	2	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr17:61890736:61890771:[+]	target	-	chr17:61890740-61890741	G>T	LICA-CN	ICGC
chr17:61892994:61893025:[+]	target	-	chr17:61893021-61893022	C>A	RECA-EU	ICGC
chrX:139865876:139865929:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC