Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865761:139865789:[+] chr9:79983013:79983042:[+] nonBSJ supported CDS

circRNA 5':CAGUGUCUUCCAGAA--AGAAAUCCAGGUCU 3'


            |||||||| ||| ||:||


target  3':AUCACAGAAUACUGAAGUCUGACA-UCUAGC 5'

 -15.40 45 RIC-seq
chrX:139865900:139865920:[+] chr9:79824344:79824356:[+] nonBSJ supported CDS

circRNA 5':CUUCCGGAAAAAAUCCAGGUC 3'


            |||||| |||:|


target  3':AAAGGCC--------GUCUAC 5'

 -11.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865900:139865920:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC